Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BUQ73_RS05890 Genome accession   NZ_CP018846
Coordinates   1282228..1284444 (+) Length   738 a.a.
NCBI ID   WP_079227042.1    Uniprot ID   -
Organism   Pseudomonas putida strain AA7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277228..1289444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ73_RS05870 - 1279110..1279733 (+) 624 WP_079227040.1 glutathione S-transferase -
  BUQ73_RS05875 - 1279867..1280799 (+) 933 WP_079227041.1 ABC transporter ATP-binding protein -
  BUQ73_RS05880 - 1280796..1281575 (+) 780 WP_027919460.1 ABC transporter permease -
  BUQ73_RS05885 - 1281459..1282085 (-) 627 WP_027919459.1 DUF2062 domain-containing protein -
  BUQ73_RS05890 comA 1282228..1284444 (+) 2217 WP_079227042.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BUQ73_RS05895 exbB 1284611..1285246 (+) 636 WP_079227043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BUQ73_RS05900 - 1285243..1285677 (+) 435 WP_027919456.1 ExbD/TolR family protein -
  BUQ73_RS05905 lpxK 1285677..1286678 (+) 1002 WP_079227044.1 tetraacyldisaccharide 4'-kinase -
  BUQ73_RS05910 - 1286732..1286917 (+) 186 WP_003247142.1 Trm112 family protein -
  BUQ73_RS05915 kdsB 1286914..1287678 (+) 765 WP_079227045.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BUQ73_RS05920 - 1287678..1288142 (+) 465 WP_079227046.1 low molecular weight protein-tyrosine-phosphatase -
  BUQ73_RS05925 murB 1288139..1289158 (+) 1020 WP_079227047.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79675.63 Da        Isoelectric Point: 9.5053

>NTDB_id=210971 BUQ73_RS05890 WP_079227042.1 1282228..1284444(+) (comA) [Pseudomonas putida strain AA7]
MRTGMFALALGLLCLGFLPVLPSVGWLLLLVLGGGVFACTRLWPLGCFLLGLCWACWSAQQALDERLAAGLDGRTLWLEG
RVVGLPTRTAQGVRFELEQPRSRRAELPRRLQLSWFNGPAIRAGEHWRLAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQVLHAAPPGWRDALRERLLNVDALGQEAALVALVLGDGAGLARDQWQVLQATGTVHLMVISGQHIGLVAGLLYAL
IAGLARWGLWPRDWPWLPWACGLALTGALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRQLGAMFPLLLALNLVLLAEPL
AVLLPGFWLSFAAVAILICSFAARLGGWRPWEAWTRAQWVIAVGLLPVLLATGLPVSLTAPLANLLAVPWVSLGVLPLAL
LGTLLLPLAGIGEGLLWLAGGMLDVLLRLLALIAAWHPAWTPPALPMLAWLLVCIGALLLLLPRGVPLRGLGGVLLLALW
VPREPVPHGQVEVWQLDVGQGLAVLLRTRHHALLYDAGPAKGEFDLGERVVLPTLRKLGVGSLDLMLISHAHADHAGGAA
AIERGLPVRQMIGGEALDDVQLQPCTSGEQWTWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AQAEAPRIDWLQAPHHGSRTSSSEAFIRATAARGVLISRGRNNSFGHPHAQVVERYRRHGVAIHDTAAEGGLRLVLGSHG
DVEGVRRQRRFWREAGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=210971 BUQ73_RS05890 WP_079227042.1 1282228..1284444(+) (comA) [Pseudomonas putida strain AA7]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTTCCCGTTTTGCCGTCGGTCGGGTGGCT
GCTACTGCTTGTGCTGGGTGGTGGTGTCTTCGCGTGCACCCGGCTGTGGCCGCTGGGCTGCTTTTTGCTGGGGCTGTGTT
GGGCCTGCTGGTCGGCCCAGCAGGCGCTGGATGAGCGCCTGGCTGCGGGGCTCGATGGCCGCACGCTATGGCTTGAGGGC
CGGGTCGTAGGCTTGCCCACACGGACTGCGCAGGGCGTGCGCTTTGAGCTGGAGCAGCCACGTTCGCGTCGCGCCGAGTT
GCCCCGGCGGCTGCAACTGAGCTGGTTCAACGGCCCGGCCATTCGCGCTGGCGAGCACTGGCGCCTGGCGGTCACCCTGC
AGCGCCCGGCGGGGTTGCTCAACCCTCATGGCCCGGACCGTGAAGCTCAACTGCTGGCGCGCCGGATCGGCGCCACTGGC
ACTGTAAAGGCGGGCCAGGTGTTGCACGCGGCGCCACCGGGGTGGCGAGATGCGCTGCGCGAGCGGCTGCTGAATGTCGA
TGCCCTTGGTCAGGAAGCTGCTTTGGTGGCGTTGGTGCTGGGGGATGGTGCGGGGTTGGCCCGCGACCAGTGGCAGGTAC
TGCAGGCTACCGGCACGGTGCACTTGATGGTGATTTCCGGCCAGCACATCGGCCTGGTTGCAGGGCTGCTGTATGCCTTG
ATAGCGGGGCTGGCACGCTGGGGATTGTGGCCACGTGACTGGCCATGGTTGCCCTGGGCATGCGGCCTGGCGCTGACGGG
GGCGCTGGCTTATGGATGGCTGGCCGGCGCCGGCGTGCCGGTGCAGCGCGCTTGCTTGATGCTGGCGGTGGTGCTGCTGT
GGCGCCTGCGCTTTCGTCAACTGGGTGCGATGTTCCCGCTGCTGCTGGCGCTGAACCTGGTGCTGTTGGCAGAGCCCCTG
GCGGTGTTGCTACCCGGGTTCTGGTTGTCGTTCGCGGCAGTGGCCATCCTGATCTGCAGCTTTGCCGCGCGTCTTGGCGG
CTGGCGGCCCTGGGAGGCGTGGACGCGGGCCCAGTGGGTAATCGCCGTAGGCCTGCTGCCGGTGTTGCTGGCCACGGGCT
TGCCGGTGAGCCTGACCGCCCCCCTGGCAAACTTGCTGGCAGTGCCCTGGGTCAGCCTGGGCGTGTTGCCGCTGGCGTTG
CTCGGCACTCTGTTGTTGCCGCTGGCCGGTATTGGCGAGGGTTTGCTATGGCTGGCGGGTGGCATGCTGGACGTGTTGTT
GCGCCTGCTTGCCTTGATAGCAGCGTGGCACCCGGCATGGACACCGCCGGCCTTGCCAATGCTTGCCTGGTTGCTTGTGT
GTATTGGAGCGCTGCTGCTGTTGCTGCCACGCGGAGTGCCGCTGCGCGGCCTGGGCGGGGTCCTGCTGCTGGCCTTGTGG
GTGCCGAGGGAACCCGTGCCGCATGGCCAGGTTGAGGTCTGGCAGCTGGACGTCGGCCAAGGGCTGGCGGTGCTGCTGCG
CACGCGGCATCACGCCCTGCTGTATGACGCAGGGCCGGCCAAGGGCGAATTCGACCTGGGCGAACGGGTGGTGCTGCCGA
CCCTGCGCAAGCTTGGGGTAGGCAGCCTGGACCTGATGTTGATCAGCCACGCCCATGCCGACCATGCGGGCGGTGCTGCG
GCCATTGAGCGTGGTTTGCCAGTCCGGCAAATGATCGGCGGCGAAGCGCTGGATGATGTGCAGCTGCAACCTTGCACCAG
TGGCGAACAATGGACCTGGGATGGCGTACGCTTTTCGTTATGGCGCTGGGCTGACGGGCAAAGCAGCAATGACCGCTCTT
GCGTGTTGCTGGTCGAGGCGCAGGGCGAGCGTTTGCTGCTGGCGGGGGATATGGAGGCCGGCGCAGAACGGGCTTGGCTG
GCACAGGCCGAAGCACCCCGTATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGCACTTCTTCAAGCGAGGCCTTCAT
CCGCGCTACGGCTGCGCGTGGGGTGCTGATTTCACGGGGGCGTAACAACAGCTTCGGGCACCCGCATGCTCAGGTGGTCG
AACGCTATCGTCGGCATGGCGTGGCCATTCACGACACGGCGGCAGAAGGGGGCTTGCGGCTGGTGCTGGGGAGCCATGGT
GATGTCGAGGGTGTGCGTCGGCAGCGGCGATTCTGGCGGGAGGCTGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-671)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.003

97.832

0.577
  comA Ralstonia pseudosolanacearum GMI1000

35.751

100

0.381

Multiple sequence alignment