Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BUQ73_RS05895 Genome accession   NZ_CP018846
Coordinates   1284611..1285246 (+) Length   211 a.a.
NCBI ID   WP_079227043.1    Uniprot ID   -
Organism   Pseudomonas putida strain AA7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279611..1290246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ73_RS05875 - 1279867..1280799 (+) 933 WP_079227041.1 ABC transporter ATP-binding protein -
  BUQ73_RS05880 - 1280796..1281575 (+) 780 WP_027919460.1 ABC transporter permease -
  BUQ73_RS05885 - 1281459..1282085 (-) 627 WP_027919459.1 DUF2062 domain-containing protein -
  BUQ73_RS05890 comA 1282228..1284444 (+) 2217 WP_079227042.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BUQ73_RS05895 exbB 1284611..1285246 (+) 636 WP_079227043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BUQ73_RS05900 - 1285243..1285677 (+) 435 WP_027919456.1 ExbD/TolR family protein -
  BUQ73_RS05905 lpxK 1285677..1286678 (+) 1002 WP_079227044.1 tetraacyldisaccharide 4'-kinase -
  BUQ73_RS05910 - 1286732..1286917 (+) 186 WP_003247142.1 Trm112 family protein -
  BUQ73_RS05915 kdsB 1286914..1287678 (+) 765 WP_079227045.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BUQ73_RS05920 - 1287678..1288142 (+) 465 WP_079227046.1 low molecular weight protein-tyrosine-phosphatase -
  BUQ73_RS05925 murB 1288139..1289158 (+) 1020 WP_079227047.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.17 Da        Isoelectric Point: 7.3616

>NTDB_id=210972 BUQ73_RS05895 WP_079227043.1 1284611..1285246(+) (exbB) [Pseudomonas putida strain AA7]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLSQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=210972 BUQ73_RS05895 WP_079227043.1 1284611..1285246(+) (exbB) [Pseudomonas putida strain AA7]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGAGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCGGATTCGCCGCTGGGCGAGATTCTCGCTGCTGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTCGAGCGCTACAT
CAGCACCCTCGGCACCATCGCTGCCATGGCGCCGCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCTGTGCTGGCCGGCGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTAGAAGTCATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment