Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BUM80_RS10665 Genome accession   NZ_CP018838
Coordinates   1954631..1956613 (+) Length   660 a.a.
NCBI ID   WP_000842584.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11A     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1944987..1954453 1954631..1956613 flank 178


Gene organization within MGE regions


Location: 1944987..1956613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM80_RS10615 (BUM80_10900) - 1944987..1945466 (+) 480 WP_044812589.1 glycosyltransferase -
  BUM80_RS10620 (BUM80_10905) - 1945708..1946805 (+) 1098 WP_044812587.1 glycosyltransferase family 1 protein -
  BUM80_RS10625 (BUM80_10910) - 1946833..1947501 (+) 669 WP_044812604.1 DUF1919 domain-containing protein -
  BUM80_RS10630 (BUM80_10915) - 1947504..1948226 (+) 723 WP_044812586.1 glycosyltransferase family 32 protein -
  BUM80_RS10635 (BUM80_10920) - 1948223..1949395 (+) 1173 WP_044812585.1 O-antigen ligase -
  BUM80_RS10640 (BUM80_10925) - 1949385..1949885 (+) 501 WP_044812583.1 acyltransferase -
  BUM80_RS10645 (BUM80_10930) - 1949895..1951082 (+) 1188 WP_044812582.1 CDP-glycerol glycerophosphotransferase family protein -
  BUM80_RS10650 (BUM80_10935) - 1951099..1952502 (+) 1404 WP_044812602.1 lipopolysaccharide biosynthesis protein -
  BUM80_RS10655 (BUM80_10940) tagD 1952615..1953007 (+) 393 WP_044812580.1 glycerol-3-phosphate cytidylyltransferase -
  BUM80_RS10660 (BUM80_10945) - 1953425..1954453 (+) 1029 WP_044812578.1 acyltransferase family protein -
  BUM80_RS10665 (BUM80_10950) amiA3 1954631..1956613 (+) 1983 WP_000842584.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73079.69 Da        Isoelectric Point: 4.7548

>NTDB_id=210869 BUM80_RS10665 WP_000842584.1 1954631..1956613(+) (amiA3) [Streptococcus pneumoniae strain 11A]
MKSSKLFALAGVTLLAATTLAACSGSGSSTKGEKTFSYIYETDPDNLNYLTTAKAATANITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADKKSDALYLVQESIKGLDAYVKGEIKDFSQVG
IKALDEQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWD
KDNVHVDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSITYLVGTNIDRQSYKYTSK
TSDEQKASTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDV
NLADSQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGADNVIIDIQQLQKDEV
NNITYFAENAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDETT
DVAKRYDKYAAAQAWLTDSALIIPTTSRTGRPILSKMVPFTIPFALSGNKGTSEPVLYKYLELQDKAVTVDEYQKAQEKW
MKEKEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=210869 BUM80_RS10665 WP_000842584.1 1954631..1956613(+) (amiA3) [Streptococcus pneumoniae strain 11A]
ATGAAAAGTTCAAAACTATTTGCCCTTGCGGGCGTGACATTATTGGCGGCGACTACTTTAGCTGCATGCTCTGGATCAGG
TTCAAGCACTAAAGGTGAGAAGACATTCTCATACATTTATGAGACAGACCCTGATAACCTCAACTATTTGACAACTGCTA
AGGCTGCGACAGCAAATATTACAAGTAACGTGGTTGATGGTTTGCTAGAAAATGATCGCTACGGGAACTTTGTGCCGTCT
ATGGCTGAGGATTGGTCTGTATCCAAGGATGGATTGACTTACACTTATACTATCCGTAAGGATGCAAAATGGTATACTTC
TGAAGGTGAAGAATACGCGGCAGTCAAAGCTCAAGACTTTGTAACAGGACTAAAATATGCTGCTGATAAAAAATCAGATG
CTCTTTACCTTGTTCAAGAATCAATCAAAGGGTTGGATGCCTATGTAAAAGGGGAAATCAAAGATTTCTCACAAGTAGGA
ATTAAGGCTCTGGATGAACAGACAGTTCAGTACACTTTGAACAAACCAGAAAGCTTCTGGAATTCTAAGACAACCATGGG
TGTGCTTGCGCCAGTTAATGAAGAGTTTTTGAATTCAAAAGGAGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCT
TGTATAACGGTCCTTATTTGTTGAAATCCATTGTGACCAAATCCTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGAT
AAGGACAATGTGCATGTTGACAAAGTTAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCTGCAGAAAACTTTAA
AGATGGTAGCCTTACAGCAGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAGGACAATA
TTGTCTATACTCAACAAGACTCTATTACGTATCTAGTTGGTACAAATATTGACCGTCAGTCCTATAAATACACATCTAAG
ACCAGCGACGAACAAAAGGCATCGACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGATTTGA
CCGTACAGCCTATGCCTCTCAGTTGAATGGACAAACTGGAGCAAGTAAAATCTTGCGTAATCTCTTTGTGCCACCAACAT
TTGTTCAAGCAGATGGTAAAAACTTTGGCGATATGGTCAAAGAGAAATTGGTCACTTATGGGGATGAATGGAAGGATGTT
AATCTTGCAGATTCTCAGGATGGTCTTTACAATCCAGAAAAAGCCAAGGCTGAATTTGCTAAAGCTAAATCAGCCTTACA
AGCAGAAGGAGTCCAATTCCCAATTCATTTGGATATGCCAGTTGACCAGACAGCAACTACAAAAGTTCAGCGCGTCCAAT
CTATGAAACAATCCTTGGAAGCAACTTTAGGAGCTGATAATGTCATTATTGATATTCAACAACTACAAAAAGACGAAGTA
AACAATATTACATATTTTGCTGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTT
TGCCGATCCATCAACCTACCTTGATATTATCAAACCTTCTGTAGGAGAAAGTACTAAAACATATTTAGGGTTTGACTCAG
GGGAAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAGGCTGGTGATGAGACTACA
GATGTTGCTAAACGCTATGATAAATACGCTGCAGCCCAAGCTTGGTTGACAGATAGTGCTTTGATTATTCCAACTACATC
TCGTACAGGGCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTG
AACCAGTCTTGTATAAATACTTGGAACTTCAAGACAAGGCAGTCACTGTAGATGAATACCAAAAAGCTCAGGAAAAATGG
ATGAAAGAAAAAGAAGAGTCTAATAAAAAGGCTCAAGAAGATCTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.699

100

0.588
  amiA3 Streptococcus thermophilus LMG 18311

58.396

100

0.585
  amiA Streptococcus salivarius strain HSISS4

58.245

100

0.583

Multiple sequence alignment