Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HD_RS08145 Genome accession   NC_002940
Coordinates   1651665..1652300 (+) Length   211 a.a.
NCBI ID   WP_010945723.1    Uniprot ID   Q7VKD0
Organism   [Haemophilus] ducreyi 35000HP     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646665..1657300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HD_RS08100 (HD1976) rplP 1646727..1647137 (-) 411 WP_010945715.1 50S ribosomal protein L16 -
  HD_RS08105 (HD1977) rpsC 1647151..1647855 (-) 705 WP_010945716.1 30S ribosomal protein S3 -
  HD_RS08110 (HD1978) rplV 1647873..1648205 (-) 333 WP_010945717.1 50S ribosomal protein L22 -
  HD_RS08115 (HD1979) rpsS 1648218..1648493 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  HD_RS08120 (HD1980) rplB 1648523..1649344 (-) 822 WP_010945718.1 50S ribosomal protein L2 -
  HD_RS08125 (HD1981) rplW 1649365..1649670 (-) 306 WP_010945719.1 50S ribosomal protein L23 -
  HD_RS08130 (HD1982) rplD 1649667..1650269 (-) 603 WP_010945720.1 50S ribosomal protein L4 -
  HD_RS08135 (HD1983) rplC 1650285..1650911 (-) 627 WP_010945721.1 50S ribosomal protein L3 -
  HD_RS08140 (HD1984) rpsJ 1650937..1651248 (-) 312 WP_010945722.1 30S ribosomal protein S10 -
  HD_RS08145 (HD1985) sxy/tfoX 1651665..1652300 (+) 636 WP_010945723.1 TfoX/Sxy family DNA transformation protein Regulator
  HD_RS08150 (HD1986) fumC 1652441..1653835 (+) 1395 WP_010945724.1 class II fumarate hydratase -
  HD_RS08155 (HD1987) murJ 1653949..1655517 (-) 1569 WP_041603589.1 murein biosynthesis integral membrane protein MurJ -
  HD_RS08160 (HD1990) rpsT 1655878..1656141 (+) 264 WP_010945727.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 25231.47 Da        Isoelectric Point: 10.0735

>NTDB_id=21079 HD_RS08145 WP_010945723.1 1651665..1652300(+) (sxy/tfoX) [[Haemophilus] ducreyi 35000HP]
MKNIEKELENLRTIFRSIGLIKFKPYFSYMGLFKDDTMFGLYKEKCLYLRKSDQYLQEIKDTIPIHFLSDHKISRQSKIF
YLVPQHIIENISSYSHWITSSISEYQRLRSKIRTENQTKIRILLNMNINIERLLARVNINTVDEFKQVGETKAFVRLIQQ
GFEVNQLLLFKLYGALQHKYIYMLSLEEKKRLLEQADSALYDAGLRKRFTV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=21079 HD_RS08145 WP_010945723.1 1651665..1652300(+) (sxy/tfoX) [[Haemophilus] ducreyi 35000HP]
ATGAAAAATATAGAAAAAGAATTAGAAAACTTACGAACGATTTTCCGTTCTATAGGGCTCATTAAGTTTAAACCTTATTT
TTCCTATATGGGCTTATTTAAAGATGATACTATGTTCGGGCTATATAAGGAAAAATGTTTATATTTACGTAAGTCAGATC
AATATTTGCAGGAAATAAAAGACACTATCCCCATTCATTTTTTATCTGATCATAAAATTAGCCGCCAATCAAAAATATTT
TATCTAGTTCCTCAACACATTATTGAAAACATTTCTTCCTATTCCCACTGGATTACGTCCTCAATCTCTGAATATCAACG
TTTACGCTCAAAAATCCGCACTGAAAATCAAACTAAAATCCGAATTTTACTGAATATGAATATTAATATTGAAAGGTTAC
TTGCTCGAGTTAATATTAATACCGTCGATGAATTTAAACAGGTTGGGGAAACAAAGGCGTTTGTTAGGCTTATCCAACAA
GGATTTGAAGTCAATCAATTACTTTTATTTAAATTATATGGTGCATTACAGCATAAATATATTTATATGCTTTCATTAGA
AGAGAAAAAAAGGTTACTGGAGCAAGCCGACTCTGCGCTCTATGACGCGGGGCTTAGAAAAAGATTTACGGTCTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(14-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7VKD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

59.809

99.052

0.592
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

58.852

99.052

0.583
  sxy/tfoX Glaesserella parasuis strain SC1401

41.038

100

0.412

Multiple sequence alignment