Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Cj1206c Genome accession   NC_002163
Coordinates   1135449..1136315 (-) Length   288 a.a.
NCBI ID   YP_002344597.1    Uniprot ID   Q0P950
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130449..1141315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1202 metF 1132302..1133150 (+) 849 YP_002344593.1 methylenetetrahydrofolate reductase -
  Cj1203c - 1133172..1133363 (-) 192 YP_002344594.1 integral membrane protein -
  Cj1204c atpB 1133360..1134040 (-) 681 YP_002344595.1 ATP synthase subunit A -
  Cj1205c radA 1134109..1135449 (-) 1341 YP_002344596.1 DNA repair protein RadA Machinery gene
  Cj1206c pilA 1135449..1136315 (-) 867 YP_002344597.1 signal recognition particle protein Machinery gene
  Cj1207c - 1136315..1136872 (-) 558 YP_002344598.1 lipoprotein thiredoxin -
  Cj1208 - 1136955..1137581 (+) 627 YP_002344599.1 5-formyltetrahydrofolate cyclo-ligase -
  Cj1209 - 1137502..1139055 (+) 1554 YP_002344600.1 ribonuclease Y -
  Cj1210 - 1139064..1139621 (+) 558 YP_002344601.1 integral membrane protein -
  Cj1211 Cj1211 1139621..1140880 (+) 1260 YP_002344602.1 competence family protein Unclear

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32052.03 Da        Isoelectric Point: 5.5179

>NTDB_id=21079 Cj1206c YP_002344597.1 1135449..1136315(-) (pilA) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVTFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=21079 Cj1206c YP_002344597.1 1135449..1136315(-) (pilA) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTACTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment