Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   BSQ33_RS10100 Genome accession   NZ_CP018835
Coordinates   2242127..2243131 (+) Length   334 a.a.
NCBI ID   WP_088134047.1    Uniprot ID   A0A1Z2SFU7
Organism   Vibrio gazogenes strain ATCC 43942     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237127..2248131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS10085 (BSQ33_10125) - 2237619..2238896 (-) 1278 WP_088134045.1 malic enzyme-like NAD(P)-binding protein -
  BSQ33_RS10090 (BSQ33_10130) rpmE 2239202..2239423 (-) 222 WP_072960545.1 50S ribosomal protein L31 -
  BSQ33_RS10095 (BSQ33_10135) priA 2239673..2241877 (+) 2205 WP_088134046.1 primosomal protein N' -
  BSQ33_RS10100 (BSQ33_10140) cytR 2242127..2243131 (+) 1005 WP_088134047.1 DNA-binding transcriptional regulator CytR Regulator
  BSQ33_RS10105 (BSQ33_10145) - 2243249..2243797 (+) 549 WP_088134048.1 SPOR domain-containing protein -
  BSQ33_RS10110 (BSQ33_10150) hslV 2243940..2244479 (+) 540 WP_038178732.1 ATP-dependent protease subunit HslV -
  BSQ33_RS10115 (BSQ33_10155) hslU 2244524..2245855 (+) 1332 WP_088134049.1 HslU--HslV peptidase ATPase subunit -
  BSQ33_RS10120 (BSQ33_10160) - 2246039..2246956 (+) 918 WP_088134050.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  BSQ33_RS10125 (BSQ33_10165) rraA 2247032..2247595 (+) 564 WP_088134572.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36678.27 Da        Isoelectric Point: 6.6914

>NTDB_id=210782 BSQ33_RS10100 WP_088134047.1 2242127..2243131(+) (cytR) [Vibrio gazogenes strain ATCC 43942]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDASKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHKKIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYHYKGDFSFEAGVKAIRLLLGLSEPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVAAPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=210782 BSQ33_RS10100 WP_088134047.1 2242127..2243131(+) (cytR) [Vibrio gazogenes strain ATCC 43942]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCAACCGCGACCGTATCTAGGGCATTGATGAATCCCGAAAA
AGTGTCGCCTACGACAAGAAAACGGGTTGAAGATGCAGTTCTTGAAGCCGGATACTCTCCGAATTCACTGGCACGAAATT
TAAGACGTAACGAATCAAAGACGATTGTTGCGATTGTTCCTGATATCTGTGATCCGTACTTCACTGAAATTATCCGAGGT
ATTGAGGATGCTGCTGTCGAACATGGTTATTTAGTGTTACTTGGGGATAGCGGCCAACAGAAGAAACGTGAAAGTTCTTT
TGTGAATCTGGTCTTTACCAAGCAAGCCGACGGTATGCTACTGCTTGGCACCGATTTACCGTTTGATGCCAGTAAGTCAG
AGCAGAAAAATCTACCACCGATGGTGATGGCTTGCGAATATGCACCGGAGCTGGAATTACCGACCGTCCATATTGATAAT
CTGACGTCTGCATTTGAAGTAGTCAATTATCTCACTCAGATGGGGCATAAAAAGATTGGCGAGATTGCCGGCCCCGATTC
AGCGGCTTTGTGTCATTTTCGTCATCAGGGCTATATGCAGGCTTTAAGACGTGCCGGCATTACGATGAACCCTGCTTATC
ATTACAAAGGTGATTTCAGCTTTGAAGCGGGTGTGAAAGCGATTCGGCTCCTGCTCGGGCTGTCTGAGCCTCCGGGGGCT
GTTTTCTGCCACAATGACATGATGGCTATCGGTGCCATTCAAGAAGCCAAACGCTTAGGTGTCAGAGTGCCTCAGGATCT
ATCAGTGGTTGGTTTCGACGATATCAACTTTGCTCAGTATTGTGATCCACCGTTAACAACAGTCTCTCAGCCTCGGTATG
AAATTGGCCGTCAGGCGATGCTGATGATGTTAGAGGTGCTTCGGGGTCACGATGTTCGGGCTGGCTCTCGTTTGCTCGAA
ACAAAATTGGTCATTCGTGAAAGTGTGGCTGCTCCTCGCGGATGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.651

99.401

0.871
  cytR Vibrio parahaemolyticus RIMD 2210633

84.985

99.701

0.847

Multiple sequence alignment