Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   BTR42_RS11005 Genome accession   NZ_CP018822
Coordinates   2213404..2214768 (-) Length   454 a.a.
NCBI ID   WP_077497726.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2208404..2219768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS10970 (BTR42_10715) rmuC 2209109..2210383 (-) 1275 WP_012962509.1 DNA recombination protein RmuC -
  BTR42_RS10975 (BTR42_10720) - 2210385..2211014 (-) 630 WP_013643475.1 thiamine diphosphokinase -
  BTR42_RS10980 (BTR42_10725) rpe 2211007..2211669 (-) 663 WP_013643476.1 ribulose-phosphate 3-epimerase -
  BTR42_RS10985 (BTR42_10730) rsgA 2211676..2212548 (-) 873 WP_077497721.1 ribosome small subunit-dependent GTPase A -
  BTR42_RS11000 (BTR42_10740) - 2213071..2213271 (-) 201 WP_077497723.1 bacteriocin -
  BTR42_RS11005 (BTR42_10745) comD/comD3 2213404..2214768 (-) 1365 WP_077497726.1 sensor histidine kinase Regulator
  BTR42_RS11010 (BTR42_10750) comE/comE2 2214781..2215509 (-) 729 WP_012962512.1 LytR/AlgR family response regulator transcription factor Regulator
  BTR42_RS11015 (BTR42_10755) - 2215608..2215901 (-) 294 WP_009854994.1 bacteriocin immunity protein -
  BTR42_RS11020 (BTR42_10760) - 2215952..2216104 (-) 153 WP_231873055.1 hypothetical protein -
  BTR42_RS11025 (BTR42_10765) - 2216448..2216759 (-) 312 WP_003066564.1 bacteriocin immunity protein -
  BTR42_RS11030 (BTR42_10770) - 2216771..2216920 (-) 150 WP_013643483.1 hypothetical protein -
  BTR42_RS11035 (BTR42_10775) - 2216977..2217228 (-) 252 WP_231844599.1 DUF3884 family protein -
  BTR42_RS12705 (BTR42_10780) - 2217529..2217669 (+) 141 WP_014295304.1 hypothetical protein -
  BTR42_RS11040 (BTR42_10785) - 2217686..2218996 (-) 1311 WP_058621373.1 sensor histidine kinase -
  BTR42_RS11045 (BTR42_10790) comE/comE1 2219001..2219732 (-) 732 WP_077497729.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 52384.70 Da        Isoelectric Point: 5.1864

>NTDB_id=210655 BTR42_RS11005 WP_077497726.1 2213404..2214768(-) (comD/comD3) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MDLRSLIAFLETFVTFLGYAILFKSITKYRLAVWEWLVSVLVLPILASGFAVVMLLCFADMDGFKTVMIKNIVVLLWFTT
LSYRHDRSLLPRYHIFYGLFPVAVEDILLRTVSYSLAALFSTRINAIGQSWIAHVDIWTPVPIYFMASKLLEIDISNVKK
TLQNYLSSTSLILINLLMAFYFFGIDYVALKSPFGSVGSESFRERVTFVYIILLFLFLFYLNYKYVREQEIELQRQQELE
LISLENYSKHVESLYQEVRSFRHDYANILLSIGESIERNDLETIKKIYNDITNDSEKFVKNSKFDLTRLSHISNSAIKSL
MSAKFLEAENLGITITLEVPEVVECPKIPLITYIRILAILFDNAIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSI
PIDNIYQKGYSSKGDNRGIGLATVSEFQQEYDNLSIETSSSNHFFRQILRIYES

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=210655 BTR42_RS11005 WP_077497726.1 2213404..2214768(-) (comD/comD3) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
TTGGATTTAAGGAGTTTAATTGCGTTTTTAGAAACCTTTGTCACGTTTTTGGGGTATGCTATCCTATTTAAAAGTATTAC
CAAGTACCGACTTGCCGTTTGGGAATGGCTAGTATCTGTTTTAGTGTTGCCAATTCTTGCATCAGGCTTTGCGGTTGTCA
TGCTTTTGTGCTTTGCGGATATGGACGGTTTCAAAACTGTCATGATTAAAAATATTGTGGTGTTGTTGTGGTTTACCACC
TTATCTTACCGTCATGATAGGTCCTTGCTACCAAGGTATCATATTTTTTATGGGCTTTTCCCAGTTGCGGTAGAGGATAT
TCTGCTTAGGACGGTGTCTTACTCATTAGCGGCGCTATTTTCCACAAGAATCAATGCTATCGGACAGTCATGGATTGCTC
ATGTTGACATCTGGACACCCGTTCCGATTTATTTTATGGCTTCAAAATTACTGGAAATTGATATTTCAAATGTCAAAAAG
ACCTTGCAAAATTACCTTAGCTCGACAAGTCTTATCTTGATTAATTTGCTAATGGCTTTCTATTTTTTTGGAATAGATTA
TGTCGCTTTGAAAAGTCCATTTGGTAGCGTAGGTAGCGAATCGTTTAGAGAAAGAGTTACTTTTGTTTACATTATTCTTC
TTTTTCTATTTTTGTTCTATCTGAATTACAAATACGTCCGTGAACAAGAGATAGAGTTACAAAGGCAGCAGGAGCTAGAA
TTAATTTCGCTGGAAAATTACAGCAAACATGTGGAAAGTTTGTACCAAGAGGTCAGAAGTTTCAGACATGACTATGCCAA
TATTTTGTTGAGTATAGGAGAAAGTATCGAGCGAAATGACTTGGAAACTATCAAAAAAATCTACAATGACATTACTAATG
ATTCTGAGAAGTTCGTCAAAAATAGCAAATTCGATTTGACACGCTTGTCTCATATTTCAAATAGTGCCATCAAAAGTTTG
ATGTCTGCTAAATTTCTAGAGGCTGAAAATCTCGGAATCACCATTACTTTGGAAGTTCCTGAAGTCGTGGAGTGTCCCAA
AATTCCACTTATTACCTACATTCGCATCCTTGCTATCTTGTTTGATAATGCGATTGAAGCTGCGGTGTTATCAGATGTTC
CTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCAAAGAAGATAGTATT
CCGATTGATAACATTTATCAAAAAGGCTATTCAAGCAAAGGAGACAATCGTGGTATTGGCTTAGCAACAGTTAGTGAATT
TCAGCAAGAATATGACAATCTCTCCATTGAAACAAGCAGCTCAAATCACTTCTTTAGACAAATTTTGAGAATCTATGAAT
CCTAG

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(354-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

50.109

100

0.504
  comD/comD2 Streptococcus equinus JB1

57.372

68.722

0.394

Multiple sequence alignment