Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   CR542_RS01935 Genome accession   NZ_CP024126
Coordinates   355802..357820 (+) Length   672 a.a.
NCBI ID   WP_099425910.1    Uniprot ID   -
Organism   Streptococcus suis strain HA0609     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350802..362820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR542_RS01935 (CR542_01930) recG/mmsA 355802..357820 (+) 2019 WP_099425910.1 ATP-dependent DNA helicase RecG Machinery gene
  CR542_RS01940 (CR542_01935) - 357993..359304 (+) 1312 Protein_338 ISL3 family transposase -
  CR542_RS01945 (CR542_01940) - 359362..360321 (-) 960 WP_014636805.1 asparaginase -
  CR542_RS11740 - 360391..361756 (+) 1366 Protein_340 Cof-type HAD-IIB family hydrolase -
  CR542_RS01960 (CR542_01955) - 361772..362224 (-) 453 WP_004194294.1 universal stress protein -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75699.21 Da        Isoelectric Point: 6.2217

>NTDB_id=210629 CR542_RS01935 WP_099425910.1 355802..357820(+) (recG/mmsA) [Streptococcus suis strain HA0609]
MKRLCDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDFESKSIYDLQDGEKAVVVGEVVSPANVQYYGYKRNRL
RFSMKQGEVVLAVSFFNQPYLADKIVLGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAI
DQGYLHLLEENLPSVLRERYRLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQMLKANNRDISNGLKIAYDA
DRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQGDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFE
SLRQLFPELSIALLTGGMKAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREKGDNP
DVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWLERELEVGAQVYFISPLIEESEALDLK
NAVDLQSDLQAHFGEQVTVDLLHGKMKNDEKDALMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGHKQSYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVANIIEDYPILEEAR
RVASQIVSVENWQEDPNWSILLANLKDREELD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=210629 CR542_RS01935 WP_099425910.1 355802..357820(+) (recG/mmsA) [Streptococcus suis strain HA0609]
ATGAAAAGATTATGTGATGAATTATCGGTTTTGCCAGGGATTGGTCCAAAATCGGCTGAAAAATTCTTAAAAATTAATAT
TCAGAATATTAATGATTTGCTGACTTACTATCCATTTAGATATGAAGATTTTGAGAGTAAGTCTATTTATGATTTGCAGG
ATGGGGAGAAGGCAGTGGTAGTTGGGGAGGTGGTATCTCCAGCTAATGTACAGTATTATGGTTACAAAAGAAATAGACTC
CGTTTTTCAATGAAACAGGGTGAGGTTGTCTTAGCAGTTTCGTTTTTTAATCAGCCTTATTTAGCAGATAAGATTGTTTT
GGGGCAGGATATTGCAGTTTGGGGAAAGTGGGATAAGGCTAAGGCAAGTTTGACAGGAATGAAAATTTTGGCTCAAGTAT
CAGATGAGCTCCAACCTGTCTATCATGTGGCGCAAGGGATTTCGCAAGTAAATTTGGTTAAGGCTATTAAAACAGCTATT
GATCAGGGATATTTGCATTTATTAGAGGAGAACTTGCCATCAGTTTTACGAGAGCGCTATCGGTTAATGAATCGCCGAGA
GGCGGTTTTTGCGATGCATTTTCCTACAAATTTAGAAGAGTATAGACAAGCTTTGCGACGTATGAAGTTTGAGGAATTAT
TTTATTTTCAATTACAGTTGCAAATGCTGAAAGCCAACAATCGTGATATTTCGAATGGTTTGAAGATTGCCTATGATGCT
GATAGATTGGCTATGCAAATAAGACAATTGCCGTTTGTCTTAACAGATGCTCAGTCTGGGGCTTTGGCTGAAATACTATC
AGATATGAAGTCCTATGGGCACATGAATCGTTTGTTACAAGGGGATGTTGGTTCAGGGAAGACAGTAGTTGCTGGATTGG
CTATGTTTGCTGCTGTGACTGCGGGGATGCAGGCTGCAATTATGGTGCCGACAGAAATTTTGGCTGAGCAACACTTTGAG
AGTTTGCGCCAGCTTTTTCCAGAACTTTCTATTGCTCTTTTGACAGGTGGAATGAAGGCTGCGGAGCGTCGTACTGCTTT
AGAGGCGATTTCTAGTGGTCAGGTAGACATCATTGTAGGAACTCATGCTCTTATACAGGAAAGTGTGACGTACCATAAGC
TTGGTTTGGTTGTGACGGATGAGCAACATCGTTTTGGTGTTAAACAGCGCCGTCTGTTTCGTGAGAAGGGTGATAATCCG
GATGTGCTTATGATGACTGCTACACCTATTCCTCGGACATTAGCCATTACAGCTTTTGGAGATATGGATGTATCGATTAT
TAATCAGTTACCTGCTGGTCGGAAGCCAATTATCACTCGCTGGGTCAAACATCAACAGCTGCCCACGGTCTTAGATTGGT
TGGAGCGGGAGTTAGAAGTGGGTGCTCAGGTTTATTTTATCTCTCCGCTAATTGAAGAATCTGAGGCTCTAGATTTAAAG
AATGCTGTAGATCTGCAATCTGATTTACAGGCGCATTTTGGAGAGCAAGTTACAGTGGATTTGTTACACGGTAAGATGAA
GAATGACGAGAAAGATGCCCTCATGCAGGCTTTTAAGGAGCGAAAAACGAATATTTTGGTTTCTACCACTGTTATTGAAG
TCGGAGTCAATGTGCCCAATGCAACGGTGATGGTTATTATGGATGCAGATCGTTTTGGTTTAAGCCAATTACATCAGTTG
AGAGGGCGTGTAGGACGTGGTCATAAGCAGTCTTATGCAGTGTTAGTTGCTAATCCTAAAACAGAGTCTGGTAAGGAACG
CATGAAAATTATGACAGAGACGACAGATGGTTTTATTTTGGCTGAAGCAGACTTAAAAATGCGTGGGTCTGGAGAAATAT
TTGGGACTCGTCAATCAGGTTTGCCAGAATTTCAGGTTGCAAATATTATCGAGGACTATCCAATTTTAGAGGAAGCAAGA
CGAGTTGCTAGTCAGATTGTTAGCGTGGAAAATTGGCAGGAGGACCCTAATTGGTCGATTTTGCTTGCTAATTTGAAAGA
TCGAGAGGAATTGGACTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

Helicase conserved C-terminal domain (Helicase_C)

(459-567)

RecG wedge domain (RecG_wedge)

(13-160)

DEAD/DEAH box helicase (DEAD)

(255-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

72.197

99.554

0.719
  recG/mmsA Streptococcus pneumoniae R36A

72.197

99.554

0.719
  recG Bacillus subtilis subsp. subtilis str. 168

49.085

97.619

0.479
  recG Neisseria meningitidis strain C311

40.337

97.024

0.391

Multiple sequence alignment