Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | BTV21_RS02310 | Genome accession | NZ_CP018808 |
| Coordinates | 498768..499988 (+) | Length | 406 a.a. |
| NCBI ID | WP_012341581.1 | Uniprot ID | A0A9Q7E4C6 |
| Organism | Histophilus somni strain USDA-ARS-USMARC-63374 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 493768..504988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTV21_RS02270 (BTV21_02265) | - | 493917..495053 (+) | 1137 | WP_075319828.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| BTV21_RS02275 (BTV21_02270) | - | 495277..495519 (+) | 243 | WP_011608610.1 | hypothetical protein | - |
| BTV21_RS02280 (BTV21_02275) | - | 495558..496292 (+) | 735 | WP_075294059.1 | 4'-phosphopantetheinyl transferase family protein | - |
| BTV21_RS02290 (BTV21_02285) | gltX | 496631..498073 (-) | 1443 | WP_075294058.1 | glutamate--tRNA ligase | - |
| BTV21_RS02310 (BTV21_02305) | pilC | 498768..499988 (+) | 1221 | WP_012341581.1 | type II secretion system F family protein | Machinery gene |
| BTV21_RS02315 (BTV21_02310) | - | 499985..500692 (+) | 708 | WP_075294057.1 | prepilin peptidase | - |
| BTV21_RS02320 (BTV21_02315) | coaE | 500712..501359 (+) | 648 | WP_075294056.1 | dephospho-CoA kinase | - |
| BTV21_RS02325 (BTV21_02320) | yacG | 501356..501550 (+) | 195 | WP_075294055.1 | DNA gyrase inhibitor YacG | - |
| BTV21_RS02330 (BTV21_02325) | - | 501955..503331 (+) | 1377 | WP_075294054.1 | alanine/glycine:cation symporter family protein | - |
| BTV21_RS02335 (BTV21_02330) | raiA | 503567..503884 (+) | 318 | WP_012341586.1 | ribosome-associated translation inhibitor RaiA | - |
| BTV21_RS02340 (BTV21_02335) | hpt | 504088..504627 (+) | 540 | WP_011608620.1 | hypoxanthine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 46702.12 Da Isoelectric Point: 9.7933
>NTDB_id=210493 BTV21_RS02310 WP_012341581.1 498768..499988(+) (pilC) [Histophilus somni strain USDA-ARS-USMARC-63374]
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISVILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQLKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWVRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISVILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQLKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=210493 BTV21_RS02310 WP_012341581.1 498768..499988(+) (pilC) [Histophilus somni strain USDA-ARS-USMARC-63374]
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCCAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAATTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGGTTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTCTTAAGTATTTCTGTCATTCTCACCGCACTTCTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAGCTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACTCAAAAAAGATTGGTTTTTATCGCATGTGCCGTTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTCTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCCAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAATTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGGTTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTCTTAAGTATTTCTGTCATTCTCACCGCACTTCTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAGCTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACTCAAAAAAGATTGGTTTTTATCGCATGTGCCGTTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTCTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
53.431 |
100 |
0.537 |
| pilC | Haemophilus influenzae 86-028NP |
53.102 |
99.261 |
0.527 |
| pilC | Glaesserella parasuis strain SC1401 |
39.901 |
100 |
0.399 |