Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC73_RS10990 Genome accession   NZ_CP024082
Coordinates   2350691..2351416 (+) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain FORC_073     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2345691..2356416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS10975 (FORC73_2076) clpC 2346139..2348712 (-) 2574 WP_001235058.1 ATP-dependent chaperone ClpB Regulator
  FORC73_RS10980 (FORC73_2077) pgeF 2348837..2349559 (-) 723 WP_119783293.1 peptidoglycan editing factor PgeF -
  FORC73_RS10985 (FORC73_2078) rluD 2349562..2350536 (-) 975 WP_000941106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC73_RS10990 (FORC73_2079) comL 2350691..2351416 (+) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  FORC73_RS10995 (FORC73_2080) raiA 2351818..2352144 (+) 327 WP_000700176.1 ribosome-associated translation inhibitor RaiA -
  FORC73_RS11000 (FORC73_2081) pheA 2352384..2353559 (+) 1176 WP_000130286.1 prephenate dehydratase -
  FORC73_RS11005 (FORC73_2082) - 2353741..2354775 (+) 1035 WP_032476883.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=210425 FORC73_RS10990 WP_000877198.1 2350691..2351416(+) (comL) [Vibrio cholerae strain FORC_073]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=210425 FORC73_RS10990 WP_000877198.1 2350691..2351416(+) (comL) [Vibrio cholerae strain FORC_073]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTAGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTTAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378

Multiple sequence alignment