Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BTV20_RS02825 Genome accession   NZ_CP018805
Coordinates   545787..546854 (-) Length   355 a.a.
NCBI ID   WP_075293444.1    Uniprot ID   A0A9Q6Z1S4
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540787..551854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS02810 (BTV20_02790) - 541183..543259 (-) 2077 Protein_545 TonB-dependent receptor domain-containing protein -
  BTV20_RS02815 (BTV20_02795) proS 543397..545112 (-) 1716 WP_075293442.1 proline--tRNA ligase -
  BTV20_RS02820 (BTV20_02800) recX 545215..545679 (-) 465 WP_075293443.1 recombination regulator RecX -
  BTV20_RS02825 (BTV20_02805) recA 545787..546854 (-) 1068 WP_075293444.1 recombinase RecA Machinery gene
  BTV20_RS02830 (BTV20_02810) - 546978..548897 (-) 1920 WP_075293445.1 ABC transporter ATP-binding protein -
  BTV20_RS02835 (BTV20_02815) - 549135..549767 (-) 633 WP_012341178.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  BTV20_RS02840 (BTV20_02820) asd 549794..550678 (-) 885 WP_075293446.1 archaetidylserine decarboxylase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37983.58 Da        Isoelectric Point: 4.9632

>NTDB_id=210424 BTV20_RS02825 WP_075293444.1 545787..546854(-) (recA) [Histophilus somni strain USDA-ARS-USMARC-63369]
MATPEEKAKALEAALGQIEKQFGKGAIMKLGDTQKLDIEAISTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDTHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVVFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGKANAMKWLAENPDQAAVL
EQKLRSELLANPEKALLADIEAESEQDISGTESDF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=210424 BTV20_RS02825 WP_075293444.1 545787..546854(-) (recA) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGGCAACCCCAGAAGAAAAAGCAAAAGCACTTGAAGCCGCTCTAGGGCAAATTGAGAAACAATTTGGTAAAGGTGCGAT
TATGAAATTAGGAGACACCCAAAAACTGGATATCGAGGCAATTTCAACCGGTTCACTTAGTTTAGATGTTGCTCTAGGTA
TTGGTGGCTTACCAATGGGACGTATTGTTGAAATTTTTGGTCCTGAATCTTCAGGTAAAACTACTTTAACATTATCTGTC
ATCGCTCAAGCACAAAAAGCGGGGAAAACCTGTGCATTTATTGATGCGGAACACGCCCTTGATCCGATTTATGCTGCTAA
ATTAGGTGTTGATGTTAAAGAATTATTAATTTCTCAACCTGACAATGGTGAACAGGCACTGGAAATCTGTGATGCCTTAG
TTCGTTCCGGTGCTGTAGATGTGGTTATTGTTGACTCTGTTGCCGCTTTAACGCCTAAAGCAGAAATTGAAGGCGAAATG
GGTGATACTCATGTTGGTTTGCAGGCAAGACTTATGTCGCAAGCATTACGTAAATTAACAGGTCAGATCAAAAACTCAAA
TTGTTTGGTCGTCTTTATCAACCAAATTCGCATGAAAATTGGTGTCGTTTTTGGCAATCCTGAAACTACGACAGGTGGTA
ATGCTTTAAAATTCTATGCTTCTGTTCGCCTTGATATTCGTCGTGTTGGTAGTATCAAAAATGGCGATGAAGTCATTGGT
AATGAAACTCGTGTAAAAGTGGTTAAAAATAAAGTAGCACCTCCGTTCCGACAAGTGGACTTCCAAATTTTATACGGTGA
AGGTATTTCTAGAAATGGTGAGCTTATTGAATTGGGTGTAAAACACAAGTTGGTAAATAAATCAGGTGCTTGGTTCTCTT
ATGAGGGCGAAAAAATTGGTCAAGGTAAAGCAAATGCAATGAAATGGTTAGCTGAAAATCCTGATCAAGCTGCTGTTTTG
GAGCAAAAATTACGTTCAGAATTATTGGCAAATCCGGAAAAAGCACTATTAGCAGATATTGAAGCTGAATCAGAACAAGA
TATATCCGGAACGGAAAGTGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.424

99.718

0.752
  recA Vibrio cholerae strain A1552

76.276

93.803

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.276

93.803

0.715
  recA Pseudomonas stutzeri DSM 10701

76.923

91.549

0.704
  recA Neisseria gonorrhoeae strain FA1090

73.684

90.986

0.67
  recA Neisseria gonorrhoeae MS11

73.684

90.986

0.67
  recA Neisseria gonorrhoeae MS11

73.684

90.986

0.67
  recA Acinetobacter baylyi ADP1

68.895

96.901

0.668
  recA Acinetobacter baumannii D1279779

68.023

96.901

0.659
  recA Ralstonia pseudosolanacearum GMI1000

71.037

92.394

0.656
  recA Helicobacter pylori 26695

61.471

95.775

0.589
  recA Helicobacter pylori strain NCTC11637

61.471

95.775

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

91.549

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.349

93.521

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

90.141

0.575
  recA Streptococcus pneumoniae TIGR4

58.382

97.465

0.569
  recA Streptococcus pneumoniae Rx1

58.382

97.465

0.569
  recA Streptococcus pneumoniae D39

58.382

97.465

0.569
  recA Streptococcus pneumoniae R6

58.382

97.465

0.569
  recA Streptococcus mitis SK321

57.925

97.746

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.245

92.113

0.555
  recA Streptococcus mutans UA159

60

91.549

0.549
  recA Streptococcus pyogenes NZ131

59.692

91.549

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

60.248

90.704

0.546
  recA Streptococcus mitis NCTC 12261

59.021

92.113

0.544
  recA Lactococcus lactis subsp. cremoris KW2

56.923

91.549

0.521

Multiple sequence alignment