Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FORC73_RS09385 Genome accession   NZ_CP024082
Coordinates   2010017..2012047 (-) Length   676 a.a.
NCBI ID   WP_000029991.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005017..2017047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS09355 (FORC73_1767) moaB 2005129..2005641 (-) 513 WP_001964305.1 molybdenum cofactor biosynthesis protein B -
  FORC73_RS09360 (FORC73_1768) moaA 2005701..2006690 (-) 990 WP_000068566.1 GTP 3',8-cyclase MoaA -
  FORC73_RS09365 (FORC73_1769) - 2006997..2007887 (+) 891 WP_000061075.1 YvcK family protein -
  FORC73_RS09370 (FORC73_1770) luxU 2007876..2008217 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  FORC73_RS09375 (FORC73_1771) luxO 2008221..2009588 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC73_RS09385 (FORC73_1772) uvrB 2010017..2012047 (-) 2031 WP_000029991.1 excinuclease ABC subunit UvrB Machinery gene
  FORC73_RS09395 (FORC73_1773) rsxA 2012929..2013510 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  FORC73_RS09400 (FORC73_1774) rsxB 2013510..2014097 (+) 588 WP_000104485.1 electron transport complex subunit RsxB -
  FORC73_RS09405 (FORC73_1775) rsxC 2014106..2016670 (+) 2565 WP_162923405.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76615.35 Da        Isoelectric Point: 5.0342

>NTDB_id=210418 FORC73_RS09385 WP_000029991.1 2010017..2012047(-) (uvrB) [Vibrio cholerae strain FORC_073]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=210418 FORC73_RS09385 WP_000029991.1 2010017..2012047(-) (uvrB) [Vibrio cholerae strain FORC_073]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCTGCTGGTGATCAGCCTACCGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGTTCGGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTGTACGGTGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTGCCGACCACGGATAC
TTTTATAGAAAAAGACGCGTCCGTGAACGCTCATATTGAACAGATGCGCTTATCGGCCACTAAAGCCTTACTTGAGCGCA
AAGATGCGGTGATTGTCGCTTCGGTTTCTGCCATCTATGGTCTGGGCGATCCGGACTCTTATCTAAAAATGATGCTCCAT
TTGCGTCGTGGTGATGTGATTAATCAACGTGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGCGGTCAGTTCCGGGTACGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGACCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAGTCGAATGCATCAGCTTATTTGACCCGCTGACGGGCGTGATTACGTCACGCGATTTAGCT
CGGTTTACGATTTACCCCAAAACTCACTATGTCACCCCACGCGAGCGCATTCTTGAGGCCATTGAGCAGATTAAGAGCGA
GTTGCAGGTCCGCCGCCAATATTTGCTGGATAACAATAAATTGCTGGAAGAGCAGCGGATTTCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAATTGGGATTCTGCTCAGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGC
GAGCCGCCTCCAACGCTCTTTGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCACACGTCACCGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGATCGTTCGCGAAAAGAAACGCTGGTGGAGTTCGGTTTTCGCCTGCCGTCAGCCTTGG
ATAACCGCCCACTTAAGTTTGATGAATTTGAAGCATTAGCACCGCAAACCATCTTTGTGTCAGCAACACCGAGTGAATAT
GAGCTCACTAAATCGGGTGGTGAAGTGGCCGAGCAGGTGGTGCGTCCAACCGGTTTGTTAGACCCGATCATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATCTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGGTTTTGGTGACTA
CCTTAACCAAACGCATGGCTGAGGACTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGCGTATTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGATATGCCAGAAGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGCTTTTTGCGTTCCGAGC
GTTCACTCATTCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGCGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTAGCTGAAGAATCGGCGGCTTATCAAGTGTTGACCCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCCGCAATGTATCAGCATGCACAGAACTTAGAGTTTGAGTTAGCGGCGCAAAAACGTGATGAAATTCATCA
GTTGCGTCAGCAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-119)

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae R6

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae D39

55.539

97.485

0.541

Multiple sequence alignment