Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CVIC12175_RS03580 Genome accession   NZ_CP018793
Coordinates   682937..683308 (+) Length   123 a.a.
NCBI ID   WP_086248269.1    Uniprot ID   -
Organism   Campylobacter vicugnae strain RM12175     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 677937..688308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC12175_RS03560 (CVIC12175_0710) - 679178..679990 (-) 813 WP_086256719.1 HDOD domain-containing protein -
  CVIC12175_RS03565 (CVIC12175_0711) ilvC 680132..681154 (+) 1023 WP_086248266.1 ketol-acid reductoisomerase -
  CVIC12175_RS03570 (CVIC12175_0712) - 681155..682192 (+) 1038 WP_086256718.1 divergent polysaccharide deacetylase family protein -
  CVIC12175_RS03575 (CVIC12175_0713) dprA 682176..682940 (+) 765 WP_086256717.1 DNA-processing protein DprA Machinery gene
  CVIC12175_RS03580 (CVIC12175_0714) dprB 682937..683308 (+) 372 WP_086248269.1 Holliday junction resolvase RuvX Machinery gene
  CVIC12175_RS03585 (CVIC12175_0715) - 683305..684171 (+) 867 WP_086256716.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVIC12175_RS03590 (CVIC12175_0716) purU 684265..685095 (+) 831 WP_086256715.1 formyltetrahydrofolate deformylase -
  CVIC12175_RS03595 (CVIC12175_0717) - 685096..685584 (+) 489 WP_086256714.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVIC12175_RS03600 (CVIC12175_0718) - 685572..686864 (+) 1293 WP_086256713.1 endonuclease/exonuclease/phosphatase family protein -
  CVIC12175_RS03605 (CVIC12175_0719) - 686857..687048 (+) 192 WP_086256712.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13580.83 Da        Isoelectric Point: 7.9991

>NTDB_id=210256 CVIC12175_RS03580 WP_086248269.1 682937..683308(+) (dprB) [Campylobacter vicugnae strain RM12175]
MIVAIDIGLKRIGMAVSPDGKIALPIAPILRKNRNQAAKDVSNALKDREAKILVVGLPKGGSSEAEMERRIKHFISLLDF
DGQICYENEAYSSLEASDLIDDKRDGKLDSVAAMIILERFLKR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=210256 CVIC12175_RS03580 WP_086248269.1 682937..683308(+) (dprB) [Campylobacter vicugnae strain RM12175]
ATGATAGTTGCTATTGATATTGGGCTTAAAAGAATAGGTATGGCAGTAAGTCCAGATGGTAAAATTGCTCTTCCAATCGC
TCCAATTCTTCGTAAGAATCGAAATCAAGCTGCAAAAGATGTGAGTAATGCCTTAAAAGATAGAGAGGCAAAAATATTAG
TAGTTGGTTTGCCAAAAGGTGGAAGCTCTGAGGCTGAGATGGAGCGAAGAATAAAACATTTTATCTCGCTTTTAGATTTT
GATGGTCAAATTTGCTATGAGAATGAGGCTTATAGTAGTTTAGAAGCTAGTGATTTAATAGATGATAAAAGAGATGGCAA
GCTTGATAGCGTGGCTGCAATGATAATTTTGGAGAGATTTTTAAAAAGATGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.212

100

0.496

Multiple sequence alignment