Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVIC12175_RS03575 Genome accession   NZ_CP018793
Coordinates   682176..682940 (+) Length   254 a.a.
NCBI ID   WP_086256717.1    Uniprot ID   -
Organism   Campylobacter vicugnae strain RM12175     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 677176..687940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC12175_RS03555 (CVIC12175_0709) - 677259..679181 (-) 1923 WP_086256720.1 RNB domain-containing ribonuclease -
  CVIC12175_RS03560 (CVIC12175_0710) - 679178..679990 (-) 813 WP_086256719.1 HDOD domain-containing protein -
  CVIC12175_RS03565 (CVIC12175_0711) ilvC 680132..681154 (+) 1023 WP_086248266.1 ketol-acid reductoisomerase -
  CVIC12175_RS03570 (CVIC12175_0712) - 681155..682192 (+) 1038 WP_086256718.1 divergent polysaccharide deacetylase family protein -
  CVIC12175_RS03575 (CVIC12175_0713) dprA 682176..682940 (+) 765 WP_086256717.1 DNA-processing protein DprA Machinery gene
  CVIC12175_RS03580 (CVIC12175_0714) dprB 682937..683308 (+) 372 WP_086248269.1 Holliday junction resolvase RuvX Machinery gene
  CVIC12175_RS03585 (CVIC12175_0715) - 683305..684171 (+) 867 WP_086256716.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVIC12175_RS03590 (CVIC12175_0716) purU 684265..685095 (+) 831 WP_086256715.1 formyltetrahydrofolate deformylase -
  CVIC12175_RS03595 (CVIC12175_0717) - 685096..685584 (+) 489 WP_086256714.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVIC12175_RS03600 (CVIC12175_0718) - 685572..686864 (+) 1293 WP_086256713.1 endonuclease/exonuclease/phosphatase family protein -
  CVIC12175_RS03605 (CVIC12175_0719) - 686857..687048 (+) 192 WP_086256712.1 hypothetical protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28227.62 Da        Isoelectric Point: 9.2339

>NTDB_id=210255 CVIC12175_RS03575 WP_086256717.1 682176..682940(+) (dprA) [Campylobacter vicugnae strain RM12175]
MNFITEFKLNSNFKNPPQKLYYKGNLELLNSPKVAIVGSRKCSVYTKNMTLNLASTLKKYGVCVVSGAAIGVDIYAHMGA
YPNTIAVFGNGLDQIYPLQNSKIIKDIYQNSLALSAYEPDTLAKGWQFLERNLITVALSDAVVVAQADIKSGSMSSARAA
IKFGIPLYVLPQRLGESSGTNELLASQKAKIITDFDKFAMEFGVKNYKKKSDEIIEFIKKNSNFDECYSKFGDKIYEYEL
DGKIAIDGIYVRIL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=210255 CVIC12175_RS03575 WP_086256717.1 682176..682940(+) (dprA) [Campylobacter vicugnae strain RM12175]
ATGAACTTTATAACTGAGTTTAAGCTAAATTCAAATTTTAAAAATCCTCCACAAAAGCTTTATTATAAGGGTAATTTAGA
ATTACTAAATTCTCCAAAAGTCGCAATTGTAGGCTCTAGAAAATGCTCAGTATATACTAAAAATATGACCTTAAATTTAG
CTTCTACATTAAAAAAATATGGAGTTTGCGTTGTTAGTGGTGCAGCAATTGGTGTAGATATCTATGCTCATATGGGTGCA
TATCCAAATACAATCGCAGTTTTTGGCAATGGTTTAGATCAGATTTATCCACTACAAAACTCTAAAATCATAAAAGATAT
ATATCAAAACTCACTAGCACTAAGTGCATATGAGCCAGATACTTTGGCAAAAGGGTGGCAATTTTTAGAGCGAAATTTAA
TCACAGTAGCCTTAAGTGATGCAGTAGTTGTAGCTCAAGCAGATATAAAAAGTGGTTCTATGAGTAGCGCAAGAGCTGCT
ATTAAATTTGGTATTCCATTATATGTTTTGCCTCAAAGATTAGGTGAGAGTAGCGGTACAAATGAGCTACTAGCAAGCCA
AAAGGCAAAGATTATTACAGATTTTGATAAATTTGCTATGGAATTTGGTGTGAAAAATTATAAAAAAAAGAGTGATGAGA
TTATAGAATTTATCAAAAAAAACTCAAATTTTGATGAGTGTTATAGTAAATTTGGGGATAAAATTTATGAATATGAACTA
GATGGCAAGATTGCTATTGATGGAATTTATGTGAGAATTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.974

92.126

0.543
  dprA Helicobacter pylori 26695

48.945

93.307

0.457

Multiple sequence alignment