Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVIC8964_RS03755 Genome accession   NZ_CP018791
Coordinates   726663..727427 (+) Length   254 a.a.
NCBI ID   WP_086333622.1    Uniprot ID   -
Organism   Campylobacter vicugnae strain RM8964     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 721663..732427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC8964_RS03735 (CVIC8964_0743) - 721746..723668 (-) 1923 WP_086333619.1 ribonuclease R family protein -
  CVIC8964_RS03740 (CVIC8964_0744) - 723665..724477 (-) 813 WP_086333620.1 HDOD domain-containing protein -
  CVIC8964_RS03745 (CVIC8964_0745) ilvC 724619..725641 (+) 1023 WP_086246551.1 ketol-acid reductoisomerase -
  CVIC8964_RS03750 (CVIC8964_0746) - 725642..726679 (+) 1038 WP_086333621.1 divergent polysaccharide deacetylase family protein -
  CVIC8964_RS03755 (CVIC8964_0747) dprA 726663..727427 (+) 765 WP_086333622.1 DNA-processing protein DprA Machinery gene
  CVIC8964_RS03760 (CVIC8964_0748) dprB 727424..727795 (+) 372 WP_086333623.1 Holliday junction resolvase RuvX Machinery gene
  CVIC8964_RS03765 (CVIC8964_0749) - 727792..728658 (+) 867 WP_086333624.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVIC8964_RS03770 (CVIC8964_0750) purU 728752..729582 (+) 831 WP_086256715.1 formyltetrahydrofolate deformylase -
  CVIC8964_RS03775 (CVIC8964_0751) - 729583..730071 (+) 489 WP_086248272.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVIC8964_RS03780 (CVIC8964_0752) - 730059..731351 (+) 1293 WP_086333625.1 endonuclease/exonuclease/phosphatase family protein -
  CVIC8964_RS03785 (CVIC8964_0753) - 731344..731535 (+) 192 WP_086248274.1 hypothetical protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28159.37 Da        Isoelectric Point: 8.1750

>NTDB_id=210243 CVIC8964_RS03755 WP_086333622.1 726663..727427(+) (dprA) [Campylobacter vicugnae strain RM8964]
MNSITEFKLNSNFKNSPQKLYYKGNLELLNSPKVAIVGSRKCSVYTKNMTLNLASTLKKYGVCVVSGAAIGVDIYAHMGA
YPNTIAVFGNGLDQIYPLQNSKIIKDIYQNSLALSAYEPDTLAKGWQFLERNLITVALSDAVVVAQADIKSGSMSSARAA
IKFGIPLYVLPQRLGESSGTNELLASQKAKIITDFDKFAMEFGVKNYEEKSDEIIEFIKKNSNFDECYSKFGDKIYEYEL
DGKIAIDGIYVRIL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=210243 CVIC8964_RS03755 WP_086333622.1 726663..727427(+) (dprA) [Campylobacter vicugnae strain RM8964]
ATGAACTCCATAACTGAGTTTAAGCTAAATTCAAATTTTAAAAATTCTCCGCAAAAGCTTTATTATAAGGGTAATTTAGA
ATTACTAAACTCTCCAAAAGTCGCAATTGTAGGCTCTAGAAAATGCTCAGTATATACTAAAAATATGACTTTAAACTTAG
CTTCTACATTAAAAAAATATGGCGTTTGCGTTGTTAGTGGTGCGGCAATTGGTGTAGATATCTATGCTCATATGGGTGCA
TATCCAAATACAATTGCAGTTTTTGGCAATGGTTTAGACCAGATTTATCCACTACAAAACTCCAAAATCATAAAAGATAT
ATATCAAAACTCACTAGCACTTAGTGCATATGAGCCAGATACTTTGGCAAAAGGGTGGCAATTTTTAGAGCGAAATTTAA
TCACAGTAGCCTTAAGTGATGCGGTAGTTGTAGCTCAAGCAGATATAAAAAGTGGTTCTATGAGTAGCGCAAGAGCTGCT
ATTAAATTTGGTATTCCATTATATGTTTTGCCTCAAAGATTAGGTGAGAGTAGCGGTACAAATGAGCTACTAGCAAGCCA
AAAGGCAAAGATTATTACAGATTTTGATAAATTTGCTATGGAATTTGGTGTGAAAAATTATGAAGAAAAGAGTGATGAAA
TTATAGAATTTATCAAAAAAAACTCAAATTTTGATGAGTGTTATAGCAAATTTGGGGATAAAATTTATGAATATGAACTA
GATGGCAAGATTGCTATTGATGGAATTTATGTGAGAATTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.974

92.126

0.543
  dprA Helicobacter pylori 26695

48.945

93.307

0.457

Multiple sequence alignment