Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CVIC8964_RS03760 Genome accession   NZ_CP018791
Coordinates   727424..727795 (+) Length   123 a.a.
NCBI ID   WP_086333623.1    Uniprot ID   A0A1X9T111
Organism   Campylobacter vicugnae strain RM8964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 722424..732795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC8964_RS03740 (CVIC8964_0744) - 723665..724477 (-) 813 WP_086333620.1 HDOD domain-containing protein -
  CVIC8964_RS03745 (CVIC8964_0745) ilvC 724619..725641 (+) 1023 WP_086246551.1 ketol-acid reductoisomerase -
  CVIC8964_RS03750 (CVIC8964_0746) - 725642..726679 (+) 1038 WP_086333621.1 divergent polysaccharide deacetylase family protein -
  CVIC8964_RS03755 (CVIC8964_0747) dprA 726663..727427 (+) 765 WP_086333622.1 DNA-processing protein DprA Machinery gene
  CVIC8964_RS03760 (CVIC8964_0748) dprB 727424..727795 (+) 372 WP_086333623.1 Holliday junction resolvase RuvX Machinery gene
  CVIC8964_RS03765 (CVIC8964_0749) - 727792..728658 (+) 867 WP_086333624.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVIC8964_RS03770 (CVIC8964_0750) purU 728752..729582 (+) 831 WP_086256715.1 formyltetrahydrofolate deformylase -
  CVIC8964_RS03775 (CVIC8964_0751) - 729583..730071 (+) 489 WP_086248272.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVIC8964_RS03780 (CVIC8964_0752) - 730059..731351 (+) 1293 WP_086333625.1 endonuclease/exonuclease/phosphatase family protein -
  CVIC8964_RS03785 (CVIC8964_0753) - 731344..731535 (+) 192 WP_086248274.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13594.86 Da        Isoelectric Point: 7.9991

>NTDB_id=210244 CVIC8964_RS03760 WP_086333623.1 727424..727795(+) (dprB) [Campylobacter vicugnae strain RM8964]
MIVAIDIGLKRIGMAISPDGKIALPIAPILRKNRNQAAKDVSNALKDREAKILVVGLPKGGSSEAEMERRIKHFISLLDF
DGQICYENEAYSSLEASDLIDDKRDGKLDSVAAMIILERFLKR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=210244 CVIC8964_RS03760 WP_086333623.1 727424..727795(+) (dprB) [Campylobacter vicugnae strain RM8964]
ATGATAGTTGCTATTGATATTGGGCTTAAAAGAATAGGTATGGCAATAAGTCCAGATGGTAAAATTGCCCTTCCAATTGC
TCCAATTCTTCGTAAGAATCGAAATCAAGCTGCAAAAGATGTGAGTAATGCCTTAAAAGATAGAGAGGCAAAAATATTAG
TAGTTGGTTTGCCAAAAGGTGGAAGCTCTGAGGCTGAGATGGAGCGAAGGATAAAACATTTTATCTCACTTTTAGATTTT
GATGGTCAAATTTGCTATGAGAATGAGGCTTATAGTAGTTTAGAAGCTAGTGATTTAATAGATGATAAAAGAGATGGCAA
GCTTGATAGCGTGGCCGCAATGATAATTTTGGAGAGATTTTTAAAAAGATGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9T111

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.212

100

0.496

Multiple sequence alignment