Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   BSU_29740 Genome accession   NC_000964
Coordinates   3044165..3045169 (-) Length   334 a.a.
NCBI ID   NP_390852.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 3039165..3050169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_29690 (BSU29690) acuA 3040092..3040724 (+) 633 NP_390847.1 protein acetyltransferase (acetylates AcsA) -
  BSU_29700 (BSU29700) acuB 3040751..3041395 (+) 645 NP_390848.1 component of the acetyl-coenzyme A synthetase regulation pathway -
  BSU_29710 (BSU29710) acuC 3041392..3042555 (+) 1164 NP_390849.1 protein deacetylase (regulates AcsA activity) -
  BSU_29720 (BSU29720) motS 3042566..3043294 (-) 729 NP_390850.1 sodium channel stator-force generator peptidoglycan binding subunit of flagellar rotation -
  BSU_29730 (BSU29730) motP 3043284..3044102 (-) 819 NP_390851.1 sodium channel stator-force generator subunit of flagellar rotation -
  BSU_29740 (BSU29740) ccpA 3044165..3045169 (-) 1005 NP_390852.1 transcriptional regulator of catabolite repression (Lacl family) Regulator
  BSU_29750 (BSU29750) aroX 3045445..3046521 (-) 1077 NP_390853.1 bifunctional chorismate mutase type II-isozyme 3 (regulatory domain); 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase -
  BSU_29760 (BSU29760) brxJ 3046757..3047083 (-) 327 NP_390854.1 bacilliredoxin involved in debacillithiolation -
  BSU_29770 (BSU29770) ytxH 3047107..3047562 (-) 456 NP_390855.2 hypothetical protein -
  BSU_29780 (BSU29780) ytxG 3047593..3048015 (-) 423 NP_390856.2 general stress protein -
  BSU_29790 (BSU29790) murC 3048177..3049475 (-) 1299 NP_390857.1 UDP-N-acetyl muramate-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=21003 BSU_29740 NP_390852.1 3044165..3045169(-) (ccpA) [Bacillus subtilis subsp. subtilis str. 168]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=21003 BSU_29740 NP_390852.1 3044165..3045169(-) (ccpA) [Bacillus subtilis subsp. subtilis str. 168]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment