Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BBX44_RS26345 Genome accession   NZ_CP024024
Coordinates   5610736..5611380 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain PARM801     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5605736..5616380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS26315 - 5606595..5607224 (+) 630 WP_003118917.1 glycoside hydrolase family 19 protein -
  BBX44_RS26320 - 5607221..5607583 (+) 363 WP_003121852.1 hypothetical protein -
  BBX44_RS26325 - 5607580..5607837 (+) 258 WP_003118919.1 hypothetical protein -
  BBX44_RS26330 - 5608185..5608790 (+) 606 WP_003117978.1 aminodeoxychorismate/anthranilate synthase component II -
  BBX44_RS26335 trpD 5608792..5609841 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  BBX44_RS26340 trpC 5609838..5610674 (+) 837 WP_003459446.1 indole-3-glycerol phosphate synthase TrpC -
  BBX44_RS26345 crp 5610736..5611380 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  BBX44_RS26350 - 5611652..5612074 (+) 423 WP_003085219.1 OsmC family protein -
  BBX44_RS26355 speD 5612394..5613188 (+) 795 WP_049269511.1 adenosylmethionine decarboxylase -
  BBX44_RS26360 coq7 5613243..5613890 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  BBX44_RS26365 - 5613990..5614328 (-) 339 WP_049269512.1 histidine triad nucleotide-binding protein -
  BBX44_RS26370 - 5614407..5615888 (+) 1482 WP_003117981.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=209768 BBX44_RS26345 WP_003085214.1 5610736..5611380(-) (crp) [Pseudomonas aeruginosa strain PARM801]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=209768 BBX44_RS26345 WP_003085214.1 5610736..5611380(-) (crp) [Pseudomonas aeruginosa strain PARM801]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment