Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BSU_11540 Genome accession   NC_000964
Coordinates   1231083..1233095 (+) Length   670 a.a.
NCBI ID   NP_389036.2    Uniprot ID   O31605
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226083..1238095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_11490 (BSU11490) yjbC 1226938..1227516 (+) 579 NP_389031.2 putative thiol oxidation management factor; putative acetyltransferase -
  BSU_11500 (BSU11500) spxA 1227697..1228092 (+) 396 NP_389032.1 redox-sensitive regulator -
  BSU_11510 (BSU11510) yjbE 1228135..1228791 (-) 657 NP_389033.1 putative membrane protein of unknown function -
  BSU_11515 (BSU11515) - 1228961..1229101 (+) 141 YP_009513949.1 hypothetical protein -
  BSU_11520 (BSU11520) mecA 1229068..1229724 (+) 657 NP_389034.1 adaptor protein controlling oligomerization of the AAA+ protein ClpC Regulator
  BSU_11525 (BSU11525) - 1229719..1229841 (-) 123 YP_009513950.1 hypothetical protein -
  BSU_11530 (BSU11530) coiA 1229915..1231036 (+) 1122 NP_389035.1 protein involved in establishment of DNA transport in competence Machinery gene
  BSU_11540 (BSU11540) pepF 1231083..1233095 (+) 2013 NP_389036.2 oligoendopeptidase F Regulator
  BSU_11549 (BSU11549) yizD 1233133..1233300 (-) 168 YP_003097703.1 hypothetical protein -
  BSU_11550 (BSU11550) spxH 1233614..1234513 (-) 900 NP_389037.2 thiol management effector of SpxA degradation -
  BSU_11560 (BSU11560) yjbI 1234510..1234908 (-) 399 NP_389038.1 putative thiol management oxidoreductase component -
  BSU_11570 (BSU11570) cwlQ 1235163..1235708 (-) 546 NP_389039.1 bifunctional muramidase and murein lytic transglycosylase -
  BSU_11580 (BSU11580) yjbK 1235912..1236484 (-) 573 NP_389040.1 putative RNA/thiamine triphosphatase -
  BSU_11590 (BSU11590) yjbL 1236609..1236977 (+) 369 NP_389041.1 hypothetical protein -
  BSU_11600 (BSU11600) relP 1237006..1237641 (+) 636 NP_389042.1 (p)ppGpp synthetase -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 77073.10 Da        Isoelectric Point: 5.6649

>NTDB_id=20973 BSU_11540 NP_389036.2 1231083..1233095(+) (pepF) [Bacillus subtilis subsp. subtilis str. 168]
MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLRNSCFFNWLESKKTRGITMAEEKKANQLPDRSEVKAE
DTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGL
NDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEASEVLGSSSNTF
SVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDNFYARVKKYKS
AREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKDYMLKGLAPLG
EEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKHQPYPYGNYSI
FVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPELLTNVYYDLNK
KYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAGSSQYPIDVLKKAGVDM
TSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=20973 BSU_11540 NP_389036.2 1231083..1233095(+) (pepF) [Bacillus subtilis subsp. subtilis str. 168]
GTGAAAGGCACAAAAGGAAAGGTTTTTCGTGTTTTTACTGCTTTTTTGGCATTCGTTCTCTTCATTACTGCATATGATTT
GACAAAAGGCAGTGAAAAACCGGAAGATATTCACAACACAAGTTTATTGAGAAACAGCTGTTTTTTCAATTGGCTTGAAT
CAAAGAAGACGAGGGGGATCACCATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAA
GACACATGGAGACTTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCC
GAATTTATCTAAGTATAAAGGAAAGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGA
TGGAGCGGCTAGGTAGGCTGTACACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTG
AATGACAAGGCGGGAAACCTGTATACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGA
AGACAAACTGCAGCAGTTCATTCTTGAAAAAGAAGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAAC
GTCCGCATGTGCTGAGCGAGAAGGAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTC
AGCGTGTTAAATAACGCAGATATAACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAA
CTTTATTAATTTCTTGGAAAGTGAAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAAT
ATAAAAACACAATGGCCACGACGCTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCC
GCGCGTGAGGCTGCGCTTTCTAACAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTT
GCCGCTCCTGCACCGCTATATTGCGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACAC
CGCTTGTGAAAGATGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGG
GAAGAATATGCCTCTATCCTAAAAGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGG
GGCTTATTCATCAGGAGCTTACGGCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGC
TCGTGCACGAGTTTGGACATTCCGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATC
TTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACA
GCGCTTATATATTCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAAC
ATCTGATTCATACAAAGGCGCAAGAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAA
AAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTA
CTATGTGTATCAGTATGCGACAGGTTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGG
TTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATG
ACGTCTCCAGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGT
CAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(181-250)

Peptidase family M3 (Peptidase_M3)

(272-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O31605

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

88.657

0.433

Multiple sequence alignment