Detailed information NTG0209723

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BBX44_RS16975
• Genome accession: NZ_CP024024
• Coordinates: 3601846..3602718 (+)
• Length: 290 a.a.
• NCBI ID: WP_003125204.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PARM801
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3596846..3607718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBX44_RS16950	-	3597715..3597957 (+)	243	WP_023082027.1	hypothetical protein	-
BBX44_RS16960	pilA	3598237..3598686 (-)	450	WP_003112842.1	type 4a pilus biogenesis protein PilA	Machinery gene
BBX44_RS16965	pilB	3598918..3600618 (+)	1701	WP_003112841.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BBX44_RS16970	pilC	3600622..3601842 (+)	1221	WP_003112840.1	type 4a pilus biogenesis protein PilC	Machinery gene
BBX44_RS16975	pilD	3601846..3602718 (+)	873	WP_003125204.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
BBX44_RS16980	coaE	3602715..3603326 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
BBX44_RS16985	yacG	3603323..3603523 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
BBX44_RS16990	-	3603560..3603769 (-)	210	WP_003094660.1	hypothetical protein	-
BBX44_RS16995	-	3603875..3604564 (-)	690	WP_049270947.1	energy-coupling factor ABC transporter permease	-
BBX44_RS17000	-	3604561..3605031 (-)	471	WP_019486073.1	hypothetical protein	-
BBX44_RS17005	-	3605028..3605453 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
BBX44_RS17010	-	3605586..3606215 (+)	630	WP_003120948.1	DUF1780 domain-containing protein	-
BBX44_RS17015	-	3606212..3606661 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
BBX44_RS17020	-	3606687..3606857 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31839.89 Da
• Isoelectric Point: 7.7068

>NTDB_id=209723 BBX44_RS16975 WP_003125204.1 3601846..3602718(+) (pilD) [Pseudomonas aeruginosa strain PARM801]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=209723 BBX44_RS16975 WP_003125204.1 3601846..3602718(+) (pilD) [Pseudomonas aeruginosa strain PARM801]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGTTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472