Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BG259_RS00850 Genome accession   NZ_CP018680
Coordinates   184906..187164 (+) Length   752 a.a.
NCBI ID   WP_074050256.1    Uniprot ID   -
Organism   Vibrio harveyi strain QT520     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 179906..192164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG259_RS00825 (BG259_00825) - 180201..180770 (-) 570 WP_009698318.1 PilZ domain-containing protein -
  BG259_RS00830 (BG259_00830) lolC 181035..182243 (+) 1209 WP_074050255.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  BG259_RS00835 (BG259_00835) lolD 182236..182943 (+) 708 WP_029790268.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BG259_RS00840 (BG259_00840) lolE 182946..184190 (+) 1245 WP_009698315.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  BG259_RS00845 (BG259_00845) - 184388..184897 (-) 510 WP_005446692.1 DUF2062 domain-containing protein -
  BG259_RS00850 (BG259_00850) comEC 184906..187164 (+) 2259 WP_074050256.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BG259_RS00855 (BG259_00855) msbA 187196..188944 (+) 1749 WP_029790264.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BG259_RS00860 (BG259_00860) lpxK 188950..189957 (+) 1008 WP_047513176.1 tetraacyldisaccharide 4'-kinase -
  BG259_RS00865 (BG259_00865) - 189938..190117 (+) 180 WP_005378451.1 Trm112 family protein -
  BG259_RS00870 (BG259_00870) kdsB 190117..190875 (+) 759 WP_005446698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84526.02 Da        Isoelectric Point: 9.5251

>NTDB_id=209621 BG259_RS00850 WP_074050256.1 184906..187164(+) (comEC) [Vibrio harveyi strain QT520]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVNQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLVLGVCVLSIRFLNREASGVLF
LVITSLALWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAEERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWILVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=209621 BG259_RS00850 WP_074050256.1 184906..187164(+) (comEC) [Vibrio harveyi strain QT520]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCAATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCAGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTCTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTGGCAAGGGCGACCGTTTCAAAGGATTCAGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACACTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTCTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATACGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGCGTTGTGGTATGAACGAAAATCCGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGCAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGTGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCGGAGGAGCGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCGCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCAGTTAGTGAATGGATCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
GAGCTCTTCTAATCCCAAGTTTGTTGAAGCGATTGCCCCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)

Competence protein (Competence)

(208-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75.266

100

0.753
  comEC Vibrio parahaemolyticus RIMD 2210633

65.16

100

0.652
  comEC Vibrio cholerae strain A1552

40.584

100

0.407

Multiple sequence alignment