Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BBX32_RS00955 Genome accession   NZ_CP018677
Coordinates   179325..180143 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain LAC4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174325..185143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX32_RS00940 (BBX32_00950) pilE 174542..174967 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  BBX32_RS00945 (BBX32_00955) pilY2 174964..175446 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  BBX32_RS00950 (BBX32_00960) pilY1 175459..179313 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  BBX32_RS00955 (BBX32_00965) pilX 179325..180143 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BBX32_RS00960 (BBX32_00970) pilW 180140..181141 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  BBX32_RS00965 (BBX32_00975) pilV 181142..181702 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  BBX32_RS00970 (BBX32_00980) fimU 181696..182169 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BBX32_RS00975 (BBX32_00985) ispH 182339..183289 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BBX32_RS00980 (BBX32_00990) gmk 183412..184041 (+) 630 WP_000015936.1 guanylate kinase -
  BBX32_RS00985 (BBX32_00995) rpoZ 184114..184392 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BBX32_RS19330 - 184431..184561 (+) 131 Protein_186 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=209577 BBX32_RS00955 WP_000149374.1 179325..180143(-) (pilX) [Acinetobacter baumannii strain LAC4]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=209577 BBX32_RS00955 WP_000149374.1 179325..180143(-) (pilX) [Acinetobacter baumannii strain LAC4]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment