Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   BBX32_RS00970 Genome accession   NZ_CP018677
Coordinates   181696..182169 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LAC4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176696..187169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX32_RS00955 (BBX32_00965) pilX 179325..180143 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BBX32_RS00960 (BBX32_00970) pilW 180140..181141 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  BBX32_RS00965 (BBX32_00975) pilV 181142..181702 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  BBX32_RS00970 (BBX32_00980) fimU 181696..182169 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BBX32_RS00975 (BBX32_00985) ispH 182339..183289 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BBX32_RS00980 (BBX32_00990) gmk 183412..184041 (+) 630 WP_000015936.1 guanylate kinase -
  BBX32_RS00985 (BBX32_00995) rpoZ 184114..184392 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BBX32_RS19330 - 184431..184561 (+) 131 Protein_186 hypothetical protein -
  BBX32_RS00990 (BBX32_01000) - 184601..186706 (+) 2106 WP_001117591.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=209580 BBX32_RS00970 WP_001214068.1 181696..182169(-) (fimU) [Acinetobacter baumannii strain LAC4]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=209580 BBX32_RS00970 WP_001214068.1 181696..182169(-) (fimU) [Acinetobacter baumannii strain LAC4]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment