Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CRN68_RS26275 Genome accession   NZ_CP023960
Coordinates   4841512..4842249 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_448     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4836512..4847249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN68_RS26245 (CRN68_26240) yfiL 4836670..4837035 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  CRN68_RS26250 (CRN68_26245) aroF 4837245..4838315 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CRN68_RS26255 (CRN68_26250) tyrA 4838326..4839447 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CRN68_RS26260 (CRN68_26255) pheA 4839490..4840650 (-) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  CRN68_RS29075 pheL 4840749..4840796 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CRN68_RS26265 (CRN68_26260) raiA 4840900..4841241 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CRN68_RS26275 (CRN68_26270) comL 4841512..4842249 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  CRN68_RS26280 (CRN68_26275) rluD 4842384..4843364 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CRN68_RS26285 (CRN68_26280) yfiH 4843361..4844092 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  CRN68_RS26290 (CRN68_26285) clpC 4844222..4846795 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=209541 CRN68_RS26275 WP_000197689.1 4841512..4842249(-) (comL) [Escherichia coli strain FDAARGOS_448]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=209541 CRN68_RS26275 WP_000197689.1 4841512..4842249(-) (comL) [Escherichia coli strain FDAARGOS_448]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment