Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CRM98_RS08860 Genome accession   NZ_CP023867
Coordinates   1684000..1684773 (-) Length   257 a.a.
NCBI ID   WP_002852253.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_422     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1679000..1689773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM98_RS08830 (CRM98_08830) aspS 1679183..1680934 (+) 1752 WP_002852289.1 aspartate--tRNA ligase -
  CRM98_RS08835 (CRM98_08835) adk 1680931..1681509 (+) 579 WP_002852182.1 adenylate kinase -
  CRM98_RS08840 (CRM98_08840) ppa 1681519..1682037 (+) 519 WP_002852138.1 inorganic diphosphatase -
  CRM98_RS08845 (CRM98_08845) msrA 1682079..1682576 (+) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CRM98_RS08850 (CRM98_08850) - 1682752..1683591 (-) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CRM98_RS08855 (CRM98_08855) dprB 1683620..1684003 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  CRM98_RS08860 (CRM98_08860) dprA 1684000..1684773 (-) 774 WP_002852253.1 DNA-processing protein DprA Machinery gene
  CRM98_RS08865 (CRM98_08865) - 1684763..1685845 (-) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  CRM98_RS08870 (CRM98_08870) ilvC 1685849..1686871 (-) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  CRM98_RS08875 (CRM98_08875) - 1686990..1688924 (+) 1935 WP_002852122.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28901.71 Da        Isoelectric Point: 7.7211

>NTDB_id=209381 CRM98_RS08860 WP_002852253.1 1684000..1684773(-) (dprA) [Campylobacter jejuni strain FDAARGOS_422]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=209381 CRM98_RS08860 WP_002852253.1 1684000..1684773(-) (dprA) [Campylobacter jejuni strain FDAARGOS_422]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459