Detailed information NTG0209046

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: BS614_RS05670
• Genome accession: NZ_CP018620
• Coordinates: 1243812..1244525 (+)
• Length: 237 a.a.
• NCBI ID: WP_074093207.1
• Uniprot ID: -
• Organism: Paenibacillus xylanexedens strain PAMC 22703
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1238812..1249525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BS614_RS05645 (BS614_05640)	-	1239520..1240776 (+)	1257	WP_074093203.1	DUF445 domain-containing protein	-
BS614_RS05650 (BS614_05645)	-	1240862..1241215 (-)	354	WP_074093204.1	YxeA family protein	-
BS614_RS05655 (BS614_05650)	-	1241245..1241976 (-)	732	WP_074093205.1	ABC transporter permease	-
BS614_RS05660 (BS614_05655)	-	1241989..1242738 (-)	750	WP_074093206.1	ABC transporter permease	-
BS614_RS05665 (BS614_05660)	-	1242738..1243655 (-)	918	WP_074096700.1	ABC transporter ATP-binding protein	-
BS614_RS05670 (BS614_05665)	scnR	1243812..1244525 (+)	714	WP_074093207.1	response regulator transcription factor	Regulator
BS614_RS05675 (BS614_05670)	-	1244525..1245907 (+)	1383	WP_074093208.1	HAMP domain-containing sensor histidine kinase	-
BS614_RS05680 (BS614_05675)	-	1246185..1246367 (+)	183	WP_074093209.1	type A2 lanthipeptide	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 27038.38 Da
• Isoelectric Point: 4.8542

>NTDB_id=209046 BS614_RS05670 WP_074093207.1 1243812..1244525(+) (scnR) [Paenibacillus xylanexedens strain PAMC 22703]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRVYTADNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGEQTIDLESAVVQGTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPVFLLTVRGLGYKLMAQESR

Nucleotide

• Length: 714 bp

>NTDB_id=209046 BS614_RS05670 WP_074093207.1 1243812..1244525(+) (scnR) [Paenibacillus xylanexedens strain PAMC 22703]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAACCTGAGATACGGGAAATGATTGAACGTTTTTTACG
TAAAGAAGGTTTTTTTCGGGTCTATACGGCCGATAACTTCGTGAATGCCTTGGCAGTATGCAGGCTTGAAAAACCGGATG
CAGCAATCCTGGACGTGATGCTTCCAGATGGGGATGGGTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTTTGTTCCTGTCGGCACGTGGTGAAGATGAGGATCGATTGCTCGGTCTGGGGCTGGGAGCGGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCAGGCTGATGGCTATTCTGAAGCGGGTATATGCCTCCAATACGGTGGAGAGAT
TGCCTGTATTCCGTTTAGGTGAACAAACCATTGATCTGGAGAGTGCTGTTGTGCAGGGGACAGACAGGGAGCTTCCATTG
ACAGCTAAGGAGCACGCCATACTGATCAAGTTGTATGAGAATCAAGGCCGGATTGTAACCAGCGATGCCCTGTGTCAAGC
CGTATGGGGAGACGAGAGTTATGGTTATGAAAATACACTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ACCCGTCCAAACCGGTATTTTTGCTAACCGTTCGGGGCCTTGGTTACAAACTGATGGCTCAGGAGTCTAGGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-117)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	50.22	95.781	0.481
micA	Streptococcus pneumoniae Cp1015	41.304	97.046	0.401
vicR	Streptococcus mutans UA159	39.056	98.312	0.384