Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LI610_RS00375 Genome accession   NZ_CP018614
Coordinates   9212..9784 (+) Length   190 a.a.
NCBI ID   WP_050889304.1    Uniprot ID   A0AAW5YUY8
Organism   Lactobacillus delbrueckii subsp. indicus strain JCM 15610     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4212..14784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI610_RS00360 (LI610_00330) gyrB 4217..6178 (+) 1962 WP_050889302.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LI610_RS00365 (LI610_00335) gyrA 6191..8662 (+) 2472 WP_011677862.1 DNA gyrase subunit A -
  LI610_RS00370 (LI610_00340) rpsF 8878..9171 (+) 294 WP_050889303.1 30S ribosomal protein S6 -
  LI610_RS00375 (LI610_00345) ssb 9212..9784 (+) 573 WP_050889304.1 single-stranded DNA-binding protein Machinery gene
  LI610_RS00380 (LI610_00350) rpsR 9811..10047 (+) 237 WP_003612635.1 30S ribosomal protein S18 -
  LI610_RS00385 (LI610_00355) - 10188..12209 (+) 2022 WP_050889305.1 DHH family phosphoesterase -
  LI610_RS00390 (LI610_00360) rplI 12232..12687 (+) 456 WP_003612605.1 50S ribosomal protein L9 -
  LI610_RS00395 (LI610_00365) dnaB 12711..14081 (+) 1371 WP_050889306.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20552.22 Da        Isoelectric Point: 4.6437

>NTDB_id=209021 LI610_RS00375 WP_050889304.1 9212..9784(+) (ssb) [Lactobacillus delbrueckii subsp. indicus strain JCM 15610]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGSGYANNNAFGSPAQSNGPANAGFNED
NKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=209021 LI610_RS00375 WP_050889304.1 9212..9784(+) (ssb) [Lactobacillus delbrueckii subsp. indicus strain JCM 15610]
ATGATCAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCCGGCCAGAGAGAGGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAATTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCAGCGGCTACGCCAACAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAAGAT
AACAAGAAAGATGCCGGCGGAGACACGAACACTAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGACGA
TCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.115

100

0.584
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.368

100

0.474

Multiple sequence alignment