Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CRT37_RS17155 Genome accession   NZ_CP023834
Coordinates   3547441..3548073 (+) Length   210 a.a.
NCBI ID   WP_000242761.1    Uniprot ID   -
Organism   Escherichia coli strain 4/2-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542441..3553073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT37_RS17130 (CRT37_18145) yheS 3542610..3544523 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  CRT37_RS17135 (CRT37_18150) yheT 3544523..3545545 (+) 1023 WP_000057356.1 hydrolase -
  CRT37_RS17140 (CRT37_18155) yheU 3545539..3545757 (+) 219 WP_000907085.1 YheU family protein -
  CRT37_RS17145 (CRT37_18160) prkB 3545811..3546680 (+) 870 WP_001274680.1 phosphoribulokinase -
  CRT37_RS17150 (CRT37_18165) yhfA 3546735..3547139 (-) 405 WP_001148908.1 OsmC family protein -
  CRT37_RS17155 (CRT37_18175) crp 3547441..3548073 (+) 633 WP_000242761.1 cAMP-activated global transcriptional regulator CRP Regulator
  CRT37_RS17160 (CRT37_18180) yhfK 3548124..3550214 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CRT37_RS17165 (CRT37_18185) argD 3550281..3551501 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CRT37_RS17170 (CRT37_18190) pabA 3551587..3552150 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CRT37_RS17175 (CRT37_18195) fic 3552182..3552784 (-) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  CRT37_RS17180 (CRT37_18200) yhfG 3552774..3552941 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23644.41 Da        Isoelectric Point: 8.2710

>NTDB_id=209000 CRT37_RS17155 WP_000242761.1 3547441..3548073(+) (crp) [Escherichia coli strain 4/2-1]
MVLGKTQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=209000 CRT37_RS17155 WP_000242761.1 3547441..3548073(+) (crp) [Escherichia coli strain 4/2-1]
ATGGTGCTTGGCAAAACGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

78.049

97.619

0.762
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment