Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BS467_RS07075 Genome accession   NZ_CP018574
Coordinates   1403954..1405333 (+) Length   459 a.a.
NCBI ID   WP_136944704.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GLB197     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398954..1410333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS07055 (BS467_07060) - 1399961..1400629 (-) 669 WP_017357860.1 YigZ family protein -
  BS467_RS07060 (BS467_07065) degS 1400851..1402026 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BS467_RS07065 (BS467_07070) degU 1402091..1402780 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BS467_RS07070 (BS467_07075) - 1402992..1403834 (+) 843 WP_024719242.1 DegV family protein -
  BS467_RS07075 (BS467_07080) comFA 1403954..1405333 (+) 1380 WP_136944704.1 DEAD/DEAH box helicase Machinery gene
  BS467_RS07080 (BS467_07085) - 1405398..1405691 (+) 294 WP_035701582.1 late competence development ComFB family protein -
  BS467_RS07085 (BS467_07090) - 1405652..1406374 (+) 723 WP_390308590.1 ComF family protein -
  BS467_RS07090 (BS467_07095) - 1406431..1406850 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  BS467_RS07095 (BS467_07100) flgM 1406930..1407193 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BS467_RS07100 (BS467_07105) - 1407212..1407694 (+) 483 WP_017357865.1 flagellar protein FlgN -
  BS467_RS07105 (BS467_07110) flgK 1407710..1409230 (+) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  BS467_RS07110 (BS467_07115) flgL 1409239..1410150 (+) 912 WP_017368141.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52671.31 Da        Isoelectric Point: 10.0308

>NTDB_id=208976 BS467_RS07075 WP_136944704.1 1403954..1405333(+) (comFA) [Bacillus altitudinis strain GLB197]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQRFIHRTPAVDRVSSGLICCRCGVSNKRYFALSPCETCKKECVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVIELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNSAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=208976 BS467_RS07075 WP_136944704.1 1403954..1405333(+) (comFA) [Bacillus altitudinis strain GLB197]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAAGATTTATCCATAGAACACCTGCTGTCGATAGGGTGTCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGAATGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTAATTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACTC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTGAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATTCAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.454

97.386

0.501

Multiple sequence alignment