Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT37_RS10285 Genome accession   NZ_CP023834
Coordinates   2128416..2128892 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 4/2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123416..2133892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT37_RS10250 (CRT37_10870) - 2123580..2124485 (+) 906 Protein_2005 diguanylate cyclase regulator RdcB family protein -
  CRT37_RS10255 (CRT37_10875) - 2124482..2125552 (+) 1071 WP_000102644.1 patatin-like phospholipase family protein -
  CRT37_RS10260 (CRT37_10880) - 2125688..2126371 (+) 684 WP_000775500.1 hypothetical protein -
  CRT37_RS10265 (CRT37_10885) - 2126387..2126797 (+) 411 WP_000846713.1 hypothetical protein -
  CRT37_RS10275 (CRT37_10895) - 2127018..2127839 (+) 822 WP_048217813.1 DUF932 domain-containing protein -
  CRT37_RS10280 (CRT37_10900) - 2127921..2128400 (+) 480 WP_000860081.1 antirestriction protein -
  CRT37_RS10285 (CRT37_10905) radC 2128416..2128892 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CRT37_RS10290 (CRT37_10910) yeeT 2128955..2129176 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CRT37_RS10295 (CRT37_10915) cbeA 2129250..2129618 (+) 369 WP_001285591.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CRT37_RS10300 (CRT37_10920) cbtA 2129707..2130080 (+) 374 Protein_2014 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CRT37_RS10305 (CRT37_10925) yeeW 2130077..2130271 (+) 195 WP_000988600.1 DUF5983 family protein -
  CRT37_RS10310 - 2130317..2130397 (+) 81 Protein_2016 hypothetical protein -
  CRT37_RS10315 (CRT37_10930) - 2130686..2130832 (-) 147 Protein_2017 transposase domain-containing protein -
  CRT37_RS10320 (CRT37_10935) - 2130886..2131068 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CRT37_RS10325 (CRT37_10940) tmaR 2131169..2131498 (-) 330 WP_000450409.1 DUF496 family protein -
  CRT37_RS10330 (CRT37_10945) yeeA 2131670..2132728 (-) 1059 WP_001200890.1 FUSC family protein -
  CRT37_RS10335 (CRT37_10950) sbmC 2132926..2133399 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=208974 CRT37_RS10285 WP_001186773.1 2128416..2128892(+) (radC) [Escherichia coli strain 4/2-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208974 CRT37_RS10285 WP_001186773.1 2128416..2128892(+) (radC) [Escherichia coli strain 4/2-1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment