Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CRT37_RS10345 Genome accession   NZ_CP023834
Coordinates   2134893..2136320 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain 4/2-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2129893..2141320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT37_RS10305 (CRT37_10925) yeeW 2130077..2130271 (+) 195 WP_000988600.1 DUF5983 family protein -
  CRT37_RS10310 - 2130317..2130397 (+) 81 Protein_2016 hypothetical protein -
  CRT37_RS10315 (CRT37_10930) - 2130686..2130832 (-) 147 Protein_2017 transposase domain-containing protein -
  CRT37_RS10320 (CRT37_10935) - 2130886..2131068 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CRT37_RS10325 (CRT37_10940) tmaR 2131169..2131498 (-) 330 WP_000450409.1 DUF496 family protein -
  CRT37_RS10330 (CRT37_10945) yeeA 2131670..2132728 (-) 1059 WP_001200890.1 FUSC family protein -
  CRT37_RS10335 (CRT37_10950) sbmC 2132926..2133399 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  CRT37_RS10340 (CRT37_10955) dacD 2133518..2134684 (-) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CRT37_RS10345 (CRT37_10960) sbcB 2134893..2136320 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  CRT37_RS10350 (CRT37_10965) tsuB 2136363..2136590 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CRT37_RS10355 (CRT37_10970) tsuA 2136604..2137662 (-) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  CRT37_RS10360 (CRT37_10975) plaP 2137841..2139199 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CRT37_RS10365 yoeI 2139189..2139251 (-) 63 WP_010723108.1 membrane protein YoeI -
  CRT37_RS10370 (CRT37_10980) yeeY 2139466..2140395 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CRT37_RS10375 (CRT37_10985) yeeZ 2140441..2141265 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=208975 CRT37_RS10345 WP_000980539.1 2134893..2136320(+) (sbcB) [Escherichia coli strain 4/2-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=208975 CRT37_RS10345 WP_000980539.1 2134893..2136320(+) (sbcB) [Escherichia coli strain 4/2-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment