Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BJD13_RS22610 Genome accession   NZ_CP018475
Coordinates   4699229..4700623 (-) Length   464 a.a.
NCBI ID   WP_008575092.1    Uniprot ID   -
Organism   Xanthomonas perforans strain LH3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4690360..4698874 4699229..4700623 flank 355


Gene organization within MGE regions


Location: 4690360..4700623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD13_RS22580 (BJD13_22710) - 4690360..4692192 (+) 1833 WP_008576878.1 hypothetical protein -
  BJD13_RS22585 (BJD13_22715) - 4692314..4693012 (+) 699 WP_158070652.1 class I SAM-dependent methyltransferase -
  BJD13_RS24830 (BJD13_22720) - 4693009..4693923 (+) 915 WP_126952614.1 lysylphosphatidylglycerol synthase domain-containing protein -
  BJD13_RS24370 - 4693915..4695048 (-) 1134 WP_161797462.1 glycosyltransferase -
  BJD13_RS22600 (BJD13_22730) - 4695074..4695931 (-) 858 WP_074053368.1 glycosyltransferase family 2 protein -
  BJD13_RS22605 (BJD13_22735) pilB 4696188..4697924 (+) 1737 WP_008575094.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJD13_RS22610 (BJD13_22740) pilR 4699229..4700623 (-) 1395 WP_008575092.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50239.61 Da        Isoelectric Point: 6.5716

>NTDB_id=208862 BJD13_RS22610 WP_008575092.1 4699229..4700623(-) (pilR) [Xanthomonas perforans strain LH3]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLSDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEQREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=208862 BJD13_RS22610 WP_008575092.1 4699229..4700623(-) (pilR) [Xanthomonas perforans strain LH3]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGAGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGATCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGCGCCGCG
GCCGAACAGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTATAAGTTGAAGAAGCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494

Multiple sequence alignment