Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | BI313_RS09615 | Genome accession | NZ_CP018470 |
| Coordinates | 1908709..1910097 (+) | Length | 462 a.a. |
| NCBI ID | WP_196769990.1 | Uniprot ID | - |
| Organism | Xanthomonas vesicatoria strain LM159 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1903709..1915097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI313_RS09600 (BI313_09525) | sucD | 1904435..1905310 (-) | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| BI313_RS09605 (BI313_09530) | sucC | 1905335..1906504 (-) | 1170 | WP_005992833.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BI313_RS09610 (BI313_09535) | - | 1906736..1908349 (+) | 1614 | WP_039421903.1 | HAMP domain-containing sensor histidine kinase | - |
| BI313_RS09615 (BI313_09540) | pilR | 1908709..1910097 (+) | 1389 | WP_196769990.1 | sigma-54 dependent transcriptional regulator | Regulator |
| BI313_RS09620 (BI313_09545) | pilB | 1910303..1912036 (-) | 1734 | WP_039421899.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BI313_RS09625 (BI313_09550) | - | 1912176..1912775 (-) | 600 | WP_039427843.1 | methionine biosynthesis protein MetW | - |
| BI313_RS09630 (BI313_09555) | - | 1912768..1913814 (-) | 1047 | WP_052318575.1 | glycosyltransferase family 2 protein | - |
| BI313_RS09635 (BI313_09560) | - | 1913811..1914605 (-) | 795 | WP_039421896.1 | glycosyltransferase family A protein | - |
Sequence
Protein
Download Length: 462 a.a. Molecular weight: 49973.34 Da Isoelectric Point: 6.4414
>NTDB_id=208837 BI313_RS09615 WP_196769990.1 1908709..1910097(+) (pilR) [Xanthomonas vesicatoria strain LM159]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALAEDDQISATDLRLPAHGGHRLAATPGSAAVE
PREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALAEDDQISATDLRLPAHGGHRLAATPGSAAVE
PREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1389 bp
>NTDB_id=208837 BI313_RS09615 WP_196769990.1 1908709..1910097(+) (pilR) [Xanthomonas vesicatoria strain LM159]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGTAT
GGGCCTGCGCATCAGCACTGCAGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCGTACGATCTGTGCCTGA
CCGACATGCGGCTGCCTGACGGCAACGGCATCGAACTGGTCACCGAAATCGCGAAGCACTACCCGCAAACACCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCGGTGGAGGCGCTGAAGGCCGGCGCATTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCACCGCCCCCGCCGC
CGCCCGAACAGGCCAGCCGCCTGCTTGGTGATTCGACCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCACGCACCATCCATGAGCAAGGCGC
GCGCGCTGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCTGCACACGGCGGCACGTTGTTCCTGGAC
GAAGTGGCCGAGTTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTCCGCCCAGTCGGCGC
CTCCGGCGAAACGCTGGTAGACGTGCGCATCCTCTCGGCCACGCATAAGGATCTCGGCGACCTGGTCTCCGACGGCCGCT
TCCGCCACGACCTCTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGTGGCGATCTACCG
CAACTCGCTGCGGCCATCATTGCGCGCCTTGCACGCAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
CGCACTGGATACCTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCGAAGACGACC
AGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGAGGCCACCGCCTGGCCGCAACGCCAGGCAGCGCCGCGGTCGAA
CCGCGCGAAGCCGTGGTCGACATCGACCCCGCGTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGCCGCGAT
CCAGAAGGCGCTTGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCCCAGCTGGGTATCACGTTTCGGGCCTTGCGCT
ACAAGTTGAAGAAGTTGGGGATGGAGTAG
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGTAT
GGGCCTGCGCATCAGCACTGCAGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCGTACGATCTGTGCCTGA
CCGACATGCGGCTGCCTGACGGCAACGGCATCGAACTGGTCACCGAAATCGCGAAGCACTACCCGCAAACACCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCGGTGGAGGCGCTGAAGGCCGGCGCATTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCACCGCCCCCGCCGC
CGCCCGAACAGGCCAGCCGCCTGCTTGGTGATTCGACCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCACGCACCATCCATGAGCAAGGCGC
GCGCGCTGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCTGCACACGGCGGCACGTTGTTCCTGGAC
GAAGTGGCCGAGTTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTCCGCCCAGTCGGCGC
CTCCGGCGAAACGCTGGTAGACGTGCGCATCCTCTCGGCCACGCATAAGGATCTCGGCGACCTGGTCTCCGACGGCCGCT
TCCGCCACGACCTCTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGTGGCGATCTACCG
CAACTCGCTGCGGCCATCATTGCGCGCCTTGCACGCAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
CGCACTGGATACCTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCGAAGACGACC
AGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGAGGCCACCGCCTGGCCGCAACGCCAGGCAGCGCCGCGGTCGAA
CCGCGCGAAGCCGTGGTCGACATCGACCCCGCGTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGCCGCGAT
CCAGAAGGCGCTTGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCCCAGCTGGGTATCACGTTTCGGGCCTTGCGCT
ACAAGTTGAAGAAGTTGGGGATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.283 |
100 |
0.634 |
| pilR | Acinetobacter baumannii strain A118 |
48.922 |
100 |
0.491 |