Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PverR02_RS19315 Genome accession   NZ_CP018420
Coordinates   4272406..4274619 (-) Length   737 a.a.
NCBI ID   WP_079444178.1    Uniprot ID   -
Organism   Pseudomonas veronii strain R02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4267406..4279619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PverR02_RS19280 (PverR02_19165) murB 4267776..4268795 (-) 1020 WP_079444176.1 UDP-N-acetylmuramate dehydrogenase -
  PverR02_RS19285 (PverR02_19170) - 4268792..4269256 (-) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  PverR02_RS19290 (PverR02_19175) kdsB 4269256..4270020 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PverR02_RS19295 (PverR02_19180) - 4270017..4270202 (-) 186 WP_003174668.1 Trm112 family protein -
  PverR02_RS19300 (PverR02_19185) lpxK 4270226..4271236 (-) 1011 WP_079444177.1 tetraacyldisaccharide 4'-kinase -
  PverR02_RS19305 (PverR02_19190) - 4271236..4271664 (-) 429 WP_046382925.1 biopolymer transporter ExbD -
  PverR02_RS19310 (PverR02_19195) exbB 4271661..4272296 (-) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PverR02_RS19315 (PverR02_19200) comA 4272406..4274619 (-) 2214 WP_079444178.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PverR02_RS19320 (PverR02_19205) - 4274767..4275282 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  PverR02_RS19325 (PverR02_19210) - 4275286..4276656 (-) 1371 WP_079444179.1 sensor histidine kinase -
  PverR02_RS19330 (PverR02_19215) - 4276643..4277371 (-) 729 WP_079444180.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79746.54 Da        Isoelectric Point: 10.2512

>NTDB_id=208585 PverR02_RS19315 WP_079444178.1 4272406..4274619(-) (comA) [Pseudomonas veronii strain R02]
MFALALGLLALRFLPALPSAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPMLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGGGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGTVLLLLPKGVPFRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLSIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASALAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGAQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=208585 PverR02_RS19315 WP_079444178.1 4272406..4274619(-) (comA) [Pseudomonas veronii strain R02]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGTCTGCCGGGATGCTGTTGGCCCTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGATGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGCTGGCGGCCCTGGTGCTGGGGGGCGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCATGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAGCCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGCGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTACTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCGGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGTTATTGGCTGGTTAGCCTGGTCGGTACGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGTTTCGGTTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAGCTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTTGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCGGCGGCTGTCGCC
CGTGGGCTGTCGATCAAACGGGTCGTCGGTGGTGAAACTGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTTCTG
GCCTCGGCCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAGGTGGTGG
AGCGCTATCAAGCGTTGGGAGCGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(18-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-662)

Competence protein (Competence)

(194-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.057

97.558

0.596
  comA Ralstonia pseudosolanacearum GMI1000

34.65

100

0.369

Multiple sequence alignment