Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PverR02_RS19310 Genome accession   NZ_CP018420
Coordinates   4271661..4272296 (-) Length   211 a.a.
NCBI ID   WP_046382924.1    Uniprot ID   A0A2N7YSQ7
Organism   Pseudomonas veronii strain R02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4266661..4277296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PverR02_RS19275 (PverR02_19160) - 4267030..4267701 (+) 672 WP_057004407.1 Bax inhibitor-1/YccA family protein -
  PverR02_RS19280 (PverR02_19165) murB 4267776..4268795 (-) 1020 WP_079444176.1 UDP-N-acetylmuramate dehydrogenase -
  PverR02_RS19285 (PverR02_19170) - 4268792..4269256 (-) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  PverR02_RS19290 (PverR02_19175) kdsB 4269256..4270020 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PverR02_RS19295 (PverR02_19180) - 4270017..4270202 (-) 186 WP_003174668.1 Trm112 family protein -
  PverR02_RS19300 (PverR02_19185) lpxK 4270226..4271236 (-) 1011 WP_079444177.1 tetraacyldisaccharide 4'-kinase -
  PverR02_RS19305 (PverR02_19190) - 4271236..4271664 (-) 429 WP_046382925.1 biopolymer transporter ExbD -
  PverR02_RS19310 (PverR02_19195) exbB 4271661..4272296 (-) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PverR02_RS19315 (PverR02_19200) comA 4272406..4274619 (-) 2214 WP_079444178.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PverR02_RS19320 (PverR02_19205) - 4274767..4275282 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  PverR02_RS19325 (PverR02_19210) - 4275286..4276656 (-) 1371 WP_079444179.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.02 Da        Isoelectric Point: 7.3613

>NTDB_id=208584 PverR02_RS19310 WP_046382924.1 4271661..4272296(-) (exbB) [Pseudomonas veronii strain R02]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=208584 PverR02_RS19310 WP_046382924.1 4271661..4272296(-) (exbB) [Pseudomonas veronii strain R02]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACACCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAACTGCGTGCCAATTCACCCCTGGGTGAAATCCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7YSQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment