Detailed information NTG0208021

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PFAS1_RS03690
• Genome accession: NZ_CP018319
• Coordinates: 730384..732606 (-)
• Length: 740 a.a.
• NCBI ID: WP_076028234.1
• Uniprot ID: -
• Organism: Pseudomonas frederiksbergensis strain AS1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 725384..737606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFAS1_RS03655 (PFAS1_03655)	murB	725761..726780 (-)	1020	WP_076028233.1	UDP-N-acetylmuramate dehydrogenase	-
PFAS1_RS03660 (PFAS1_03660)	-	726777..727241 (-)	465	WP_074879007.1	low molecular weight protein-tyrosine-phosphatase	-
PFAS1_RS03665 (PFAS1_03665)	kdsB	727241..728005 (-)	765	WP_008152377.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PFAS1_RS03670 (PFAS1_03670)	-	728002..728187 (-)	186	WP_007945752.1	Trm112 family protein	-
PFAS1_RS03675 (PFAS1_03675)	lpxK	728213..729222 (-)	1010	Protein_712	tetraacyldisaccharide 4'-kinase	-
PFAS1_RS03680 (PFAS1_03680)	-	729222..729653 (-)	432	WP_074879013.1	ExbD/TolR family protein	-
PFAS1_RS03685 (PFAS1_03685)	exbB	729650..730285 (-)	636	WP_046054381.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PFAS1_RS03690 (PFAS1_03690)	comA	730384..732606 (-)	2223	WP_076028234.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PFAS1_RS03695 (PFAS1_03695)	-	732741..733259 (+)	519	WP_074879019.1	DUF2062 domain-containing protein	-
PFAS1_RS03700 (PFAS1_03700)	-	733437..734216 (-)	780	WP_076028235.1	ABC transporter permease	-
PFAS1_RS03705 (PFAS1_03705)	-	734213..735145 (-)	933	WP_076028236.1	ABC transporter ATP-binding protein	-
PFAS1_RS03710 (PFAS1_03710)	-	735279..735902 (-)	624	WP_076028237.1	glutathione S-transferase family protein	-
PFAS1_RS03715 (PFAS1_03715)	-	735946..736605 (-)	660	WP_076028238.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 81476.77 Da
• Isoelectric Point: 10.0195

>NTDB_id=208021 PFAS1_RS03690 WP_076028234.1 730384..732606(-) (comA) [Pseudomonas frederiksbergensis strain AS1]
MRTGMMALALGLLILRFLPVLPPVWLLMLLPVIGLMLLPFRSYPLAFFLFGFSWAGANAQWALDDRLPTSLDGETRWVEG
RVTGLPQNNEAVVRFELADARSRHGKVPQLMRLAWYDGPPVNSGEHWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKAGERLKETRWAWRDGVRQRLQSVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLVVLPVAL
LGTLFLPLPYVGEGLLWLAGGLIDLLFKGLTLMAGYLPAWVPMAIPLWIWAVGTLGALLLLMPRGVPFRALGWPMLLLLV
FPPRQVLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPALRKLGVEGLDVMLISHADADHAGGA
GAVADGLPVKRVVSGDPQALPTELQAQGCESGKQWVWDDVRFQLWQWPSASESNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDSPLAVTTDWLQAPHHGSRSSSSMALLTALQPKAVLISRGHGNSFGHPHPTVVARYQKRGLSVYDSAEQGAIRLQL
GRFKPPWTMRQERRFWRSAH

Nucleotide

• Length: 2223 bp

>NTDB_id=208021 PFAS1_RS03690 WP_076028234.1 730384..732606(-) (comA) [Pseudomonas frederiksbergensis strain AS1]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGATCCTGCGTTTTTTACCGGTATTACCGCCGGTCTGGTTATT
GATGTTGCTACCGGTCATCGGTTTGATGTTGCTGCCGTTTCGCAGCTATCCACTGGCTTTCTTCCTGTTCGGCTTCAGCT
GGGCAGGCGCGAATGCACAGTGGGCGCTGGATGATCGATTGCCGACGAGCCTCGATGGCGAAACCCGGTGGGTCGAAGGC
CGGGTGACGGGATTGCCGCAGAACAATGAGGCCGTCGTGCGTTTCGAGTTGGCGGACGCCCGGTCGCGACACGGCAAGGT
GCCGCAACTGATGCGCCTGGCCTGGTATGACGGGCCGCCGGTCAACAGCGGCGAACATTGGCGACTGGCGGTCAAGTTGA
AGCGTCCAGCAGGGCTGCTCAACCCCCATGCCTTCGACTACGACGCCTGGCTGTTGGCGCAACGCATTGGCGCTACCGGG
ACGGTCAAGGCTGGCGAACGGCTCAAGGAAACCCGATGGGCCTGGCGCGACGGCGTCCGTCAGCGCTTGCAGTCCGTGGA
TGCCCAAGGGCGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTGAGTCGCGAAGACTGGCAGGTGC
TGCAAGACACCGGCACCGTCCATCTGTTGGTAATTTCCGGCCAACACATCGGGTTGTTGGCAGGGCTGGTGTATCTGTTG
ATCGCCGGGCTGGCCCGTTATGGCCTATGGCCGAAACGCTTGCCTTGGCTGCCGTGGGCCTGTGGACTCGCATTCGCGGC
CGCTCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGGGCCTGCGTGATGATTGGCCTGGTGCTGTTGT
GGCGCCTGCGATTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCGACGGGGTGTTGCTGCTGGATCCGCTG
GCGAGTCTGCAACCGGGTTTCTGGCTGTCGTTCGCAGCAGTGGCGGTGTTGATCTTCACCTTCGGGGGGCGGCTGGGCCC
ATGGCGTTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCGATTGGCCTGTGTCCGTTGCTGCTGGTGCTCGGGT
TGCCGATCAGTCTAAGCGGGCCGCTGGCCAATTTGCTCGCGGTGCCGTGGATCAGCCTGGTTGTGCTGCCCGTGGCCTTG
CTGGGTACGTTGTTTTTACCCCTTCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCAGGAGGTCTGATCGACCTCTTGTT
CAAGGGCTTGACGCTGATGGCCGGGTACTTGCCCGCGTGGGTGCCGATGGCCATCCCATTGTGGATTTGGGCTGTAGGCA
CACTCGGCGCGCTTCTACTATTAATGCCTCGGGGTGTGCCGTTTCGCGCGTTGGGTTGGCCGATGCTGCTGTTGCTGGTT
TTTCCGCCCCGGCAAGTCTTGCCTGAAGGCATTGCCGAAGTCTGGCAGCTGGATGTCGGCCAGGGTTTGGCGATCCTCGT
TCGCACCCGTCATCACACACTGTTGTATGACACCGGGCCACGATTCGGCGATTTCGACCTGGGCGAGCGGGTGGTGCTGC
CGGCATTACGCAAGCTGGGCGTGGAGGGGCTCGATGTGATGCTGATCAGCCATGCCGACGCCGATCATGCAGGCGGGGCC
GGGGCCGTGGCCGATGGTCTGCCGGTAAAACGGGTGGTCAGTGGCGATCCCCAGGCGCTGCCGACGGAGTTACAGGCGCA
GGGCTGCGAGAGCGGCAAGCAATGGGTCTGGGATGATGTCAGGTTCCAGCTCTGGCAATGGCCTTCGGCCAGCGAGAGCA
ATCAAAAATCCTGTGTCCTTCAAATTGAAGCCAACGGTGAGCGTCTGTTATTGACCGGTGATATAGACGCGGCAGCCGAG
CGGGCACTGCTCGACAGTCCACTGGCCGTCACCACTGATTGGTTGCAGGCGCCGCACCACGGCAGTCGCAGTTCGTCTTC
AATGGCGCTGCTTACCGCGCTGCAACCCAAAGCAGTGCTGATCTCCCGCGGTCACGGCAATTCATTCGGTCATCCCCATC
CTACGGTCGTCGCGCGCTATCAAAAACGCGGCCTGTCGGTTTATGACAGCGCCGAGCAGGGCGCCATCCGTCTGCAACTG
GGACGTTTCAAACCGCCGTGGACGATGCGTCAAGAACGGCGCTTCTGGCGCTCTGCGCACTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.547	96.757	0.615
comA	Ralstonia pseudosolanacearum GMI1000	33.492	100	0.381