Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PFAS1_RS03685 Genome accession   NZ_CP018319
Coordinates   729650..730285 (-) Length   211 a.a.
NCBI ID   WP_046054381.1    Uniprot ID   -
Organism   Pseudomonas frederiksbergensis strain AS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 724650..735285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFAS1_RS03650 (PFAS1_03650) - 725046..725516 (-) 471 WP_074879003.1 (2Fe-2S)-binding protein -
  PFAS1_RS03655 (PFAS1_03655) murB 725761..726780 (-) 1020 WP_076028233.1 UDP-N-acetylmuramate dehydrogenase -
  PFAS1_RS03660 (PFAS1_03660) - 726777..727241 (-) 465 WP_074879007.1 low molecular weight protein-tyrosine-phosphatase -
  PFAS1_RS03665 (PFAS1_03665) kdsB 727241..728005 (-) 765 WP_008152377.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PFAS1_RS03670 (PFAS1_03670) - 728002..728187 (-) 186 WP_007945752.1 Trm112 family protein -
  PFAS1_RS03675 (PFAS1_03675) lpxK 728213..729222 (-) 1010 Protein_712 tetraacyldisaccharide 4'-kinase -
  PFAS1_RS03680 (PFAS1_03680) - 729222..729653 (-) 432 WP_074879013.1 ExbD/TolR family protein -
  PFAS1_RS03685 (PFAS1_03685) exbB 729650..730285 (-) 636 WP_046054381.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PFAS1_RS03690 (PFAS1_03690) comA 730384..732606 (-) 2223 WP_076028234.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFAS1_RS03695 (PFAS1_03695) - 732741..733259 (+) 519 WP_074879019.1 DUF2062 domain-containing protein -
  PFAS1_RS03700 (PFAS1_03700) - 733437..734216 (-) 780 WP_076028235.1 ABC transporter permease -
  PFAS1_RS03705 (PFAS1_03705) - 734213..735145 (-) 933 WP_076028236.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22868.08 Da        Isoelectric Point: 7.3615

>NTDB_id=208020 PFAS1_RS03685 WP_046054381.1 729650..730285(-) (exbB) [Pseudomonas frederiksbergensis strain AS1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLNGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=208020 PFAS1_RS03685 WP_046054381.1 729650..730285(-) (exbB) [Pseudomonas frederiksbergensis strain AS1]
GTGTGGGAATTAGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGCGGCCATGGCAATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTAACCCCGGAGCATTTGCTCGGGCAAGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGTTGGGCGAAATCCTCGCCGCTGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCCGCACGGGTCATCCACGAGCTTGAACGCTACAT
CAATGCGTTGGGCACCATCGCTGCCATGGCTCCGTTGCTGGGTCTGCTGGGGACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACAGGCATGGGTACCAATGCTGCGGTGCTGGCAGGCGGTATTTCCAAAGCGCTGATCACCACGGCC
GCGGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCATCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTAGTACAGGGTGACCGTGATGTTGACCTGAATGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment