Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BSZ04_RS18520 Genome accession   NZ_CP018312
Coordinates   2041245..2043500 (-) Length   751 a.a.
NCBI ID   WP_088881098.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2036245..2048500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS18500 (BSZ04_18265) kdsB 2037534..2038292 (-) 759 WP_088881095.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BSZ04_RS18505 (BSZ04_18270) - 2038292..2038471 (-) 180 WP_005378451.1 Trm112 family protein -
  BSZ04_RS18510 (BSZ04_18275) lpxK 2038452..2039459 (-) 1008 WP_088881096.1 tetraacyldisaccharide 4'-kinase -
  BSZ04_RS18515 (BSZ04_18280) msbA 2039465..2041213 (-) 1749 WP_088881097.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BSZ04_RS18520 (BSZ04_18285) comEC 2041245..2043500 (-) 2256 WP_088881098.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BSZ04_RS18525 (BSZ04_18290) - 2043509..2044018 (+) 510 WP_010447143.1 DUF2062 domain-containing protein -
  BSZ04_RS18530 (BSZ04_18295) lolE 2044218..2045462 (-) 1245 WP_088881099.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  BSZ04_RS18535 (BSZ04_18300) lolD 2045465..2046172 (-) 708 WP_010447138.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BSZ04_RS18540 (BSZ04_18305) lolC 2046165..2047373 (-) 1209 WP_071235725.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  BSZ04_RS18545 (BSZ04_18310) - 2047640..2048209 (+) 570 WP_088881101.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84872.53 Da        Isoelectric Point: 8.7430

>NTDB_id=208003 BSZ04_RS18520 WP_088881098.1 2041245..2043500(-) (comEC) [Vibrio rotiferianus strain B64D1]
MTLSEKSLALALFVASVFSSAWWPMMPSWHWLLLGIFAVGSIIKLRRGLMCIGVIWGCMVVIAHGNVMEQQKQALFKAGV
NITINGKVDSPFTQISHGYEGIVVVSHVNSQSLLPFFKPKVRLITSIPLGVNSEIKAEVELKPITGLKNEVGFDSENFSL
SQGIVARATSMKDSRWIVRSKSALRQTLIARINASIAGLYNEPLIRALSYSDRSLLTPDLWKSLRDSGLIHLVSISGLHI
GMALSFGCFLGFLFRLAIPWANHLPYIFGLVFAVAYSWLADFSLPTVRALSVCAIYLFLKYHKLHWPSWRILLLAISGQL
LVEPFSFLGSSFWLSYLSVVAVLVVLNIVWMNQYSWLNILKHIIAVQLALSLFILPVSGYFFSGFSAVSPLFNLIFIPWF
SLVVVPMIFIALLFTCLTADVFSWVWIFVDGVLWPLNWALGLAEETWFAVSDDSLILITLILFCLFGLRFLTVNSILLII
SIATLYLVFPFKQYYWRVDVLDVGHGLSVLFEKDDKALLYDTGKSWRGGSIAERVISPILHSKGHSQIDALILSHLDDDH
AGGRRFLEENFEPNDKFSSQLLPDYLPCIEGEAWYWQGVKFEAIWPPKLVRRAFNPHSCVIRVVDPVSNFRILLTGDIEA
ISEWILIRRPELLDSDIVIVPHHGSKSSSNPKFIEAINPQIAIASLAKNNRWGMPSPSVQQAYTSLGTSWFDTGESGQVS
IYVWRDFWRLKTQRNKMFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=208003 BSZ04_RS18520 WP_088881098.1 2041245..2043500(-) (comEC) [Vibrio rotiferianus strain B64D1]
ATGACTCTCTCAGAAAAAAGTTTGGCCTTGGCGTTATTTGTAGCAAGCGTTTTTTCATCTGCGTGGTGGCCGATGATGCC
GAGTTGGCATTGGTTGCTGCTGGGTATTTTTGCCGTTGGCTCAATAATCAAACTACGTCGAGGCTTAATGTGCATTGGCG
TAATTTGGGGCTGTATGGTGGTTATTGCCCATGGCAATGTCATGGAACAACAAAAACAAGCCCTGTTTAAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGTCGTTGTTAGCCA
CGTAAATTCTCAATCTCTCTTACCATTTTTTAAACCAAAAGTTCGGTTGATAACCTCAATTCCACTTGGTGTTAACAGTG
AAATTAAGGCGGAAGTAGAGTTAAAGCCGATTACGGGCTTAAAAAACGAGGTTGGTTTTGATTCAGAAAACTTTTCTTTA
AGTCAGGGTATTGTGGCAAGAGCGACTTCGATGAAAGACAGTCGCTGGATTGTTCGCTCAAAAAGCGCTCTCAGACAAAC
ACTCATCGCGCGTATTAACGCCAGTATTGCAGGTTTATATAATGAACCTTTAATAAGAGCTCTGAGTTACAGCGATCGCT
CATTACTTACTCCCGACTTATGGAAAAGCTTGCGAGACAGTGGACTTATTCATCTAGTATCCATTTCTGGTTTACACATT
GGCATGGCGCTCTCATTTGGCTGTTTTCTTGGTTTTTTGTTTCGTCTTGCAATTCCGTGGGCTAATCATTTGCCCTACAT
CTTTGGGCTAGTTTTTGCTGTTGCTTATTCTTGGCTTGCTGATTTTTCGTTGCCAACTGTGCGCGCCCTAAGTGTATGCG
CGATCTATTTGTTTCTTAAGTACCATAAACTGCATTGGCCAAGTTGGAGGATTTTACTGCTCGCCATTAGTGGGCAACTT
TTAGTCGAGCCGTTTTCTTTCCTAGGTAGCAGTTTTTGGTTGTCTTACTTATCGGTAGTTGCGGTGCTTGTTGTACTTAA
TATTGTTTGGATGAACCAATATAGTTGGCTTAACATTTTAAAGCATATCATCGCAGTTCAACTTGCTCTGTCGCTGTTCA
TTTTGCCAGTTAGCGGCTACTTTTTTTCAGGTTTTAGCGCAGTATCTCCCCTTTTTAATCTGATTTTTATCCCTTGGTTT
AGCCTGGTTGTGGTTCCTATGATATTTATAGCGCTACTTTTCACCTGCTTGACCGCAGATGTTTTTAGTTGGGTATGGAT
ATTCGTCGATGGGGTACTTTGGCCTCTAAATTGGGCGTTAGGATTGGCTGAGGAAACTTGGTTTGCTGTTAGTGATGACT
CACTTATTCTTATAACGTTGATATTGTTTTGTTTGTTTGGGCTTCGTTTTCTTACTGTGAATAGCATCCTACTCATCATC
AGTATTGCCACGCTCTATCTCGTCTTTCCCTTTAAACAGTATTACTGGCGTGTTGATGTTTTAGATGTGGGCCACGGGCT
ATCAGTGTTGTTTGAGAAAGACGATAAGGCATTGCTCTATGATACGGGGAAATCATGGAGAGGGGGGAGCATTGCTGAAA
GAGTTATCTCGCCTATCCTACATTCAAAAGGGCACTCTCAAATTGACGCTTTGATCCTCAGTCATTTGGATGATGACCAC
GCAGGAGGAAGACGGTTCTTAGAAGAGAATTTTGAACCTAATGACAAGTTCAGTAGTCAGCTTCTGCCGGATTATCTTCC
TTGTATCGAGGGCGAAGCCTGGTATTGGCAAGGGGTGAAGTTTGAAGCAATCTGGCCACCTAAATTAGTAAGGCGTGCTT
TTAACCCTCACTCGTGCGTCATTAGGGTCGTTGATCCTGTTTCTAACTTTCGAATTTTACTAACCGGAGATATTGAGGCC
ATTAGTGAATGGATTTTAATCAGACGACCAGAACTGTTAGATAGTGATATCGTGATTGTCCCCCACCATGGCAGTAAAAG
CTCTTCTAATCCCAAGTTTATTGAAGCAATAAACCCTCAAATAGCCATCGCTTCTTTGGCTAAAAATAATCGGTGGGGGA
TGCCATCCCCATCTGTACAGCAGGCCTACACGTCTTTGGGCACATCATGGTTTGATACTGGAGAATCTGGGCAGGTGAGT
ATTTATGTATGGCGGGATTTTTGGCGATTAAAAACGCAACGTAACAAGATGTTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)

Competence protein (Competence)

(209-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

58.511

100

0.586
  comEC Vibrio parahaemolyticus RIMD 2210633

56.574

100

0.567
  comEC Vibrio cholerae strain A1552

40.981

100

0.411

Multiple sequence alignment