Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BSZ04_RS13100 Genome accession   NZ_CP018312
Coordinates   865626..866987 (+) Length   453 a.a.
NCBI ID   WP_045394388.1    Uniprot ID   A0AAW7AAS8
Organism   Vibrio rotiferianus strain B64D1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 860626..871987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS13080 (BSZ04_12945) rsxB 861045..861638 (-) 594 WP_005439677.1 electron transport complex subunit RsxB -
  BSZ04_RS13085 (BSZ04_12950) rsxA 861642..862220 (-) 579 WP_005425202.1 electron transport complex subunit RsxA -
  BSZ04_RS13095 (BSZ04_12960) uvrB 863200..865230 (+) 2031 WP_088880535.1 excinuclease ABC subunit UvrB -
  BSZ04_RS13100 (BSZ04_12965) luxO 865626..866987 (+) 1362 WP_045394388.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BSZ04_RS13105 (BSZ04_12970) luxU 866984..867328 (+) 345 WP_010449380.1 quorum-sensing phosphorelay protein LuxU -
  BSZ04_RS13110 (BSZ04_12975) yvcK 867375..868265 (-) 891 WP_088880536.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  BSZ04_RS13115 (BSZ04_12980) moaA 868568..869557 (+) 990 WP_038885128.1 GTP 3',8-cyclase MoaA -
  BSZ04_RS13120 (BSZ04_12985) moaB 869658..870170 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  BSZ04_RS13125 (BSZ04_12990) moaC 870197..870673 (+) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  BSZ04_RS13130 (BSZ04_12995) moaD 870673..870930 (+) 258 WP_010449371.1 molybdopterin synthase sulfur carrier subunit -
  BSZ04_RS13135 (BSZ04_13000) moaE 870932..871387 (+) 456 WP_010449369.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50298.34 Da        Isoelectric Point: 5.1393

>NTDB_id=207996 BSZ04_RS13100 WP_045394388.1 865626..866987(+) (luxO) [Vibrio rotiferianus strain B64D1]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKESNPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
YMSHEEGKSFVRFSPEVIERFNDYEWPGNVRQLQNVLRNIVVLNSGKEISLDMLPPPLNAPMTKTPMPRAVEIESFSASD
IIPLWMTEKSAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNQTEEQKKA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=207996 BSZ04_RS13100 WP_045394388.1 865626..866987(+) (luxO) [Vibrio rotiferianus strain B64D1]
ATGGTCGAAGATACCGCATCCGTCGCAGCGTTATATCGCTCCTATCTAACACCTCTTGGTATTGATATTAATATCGTTGG
CACTGGGCGTGATGCTATTGACAGTTTAAAGCACCGAATCCCAGATTTAATTCTGCTGGATCTGCGTCTACCCGATATGA
CAGGTATGGATGTTCTCCATGCGGTTAAAGAGAGTAACCCAGACGTCCCGATCATTTTTATGACGGCACACGGCTCTATT
GATACGGCCGTAGAGGCAATGCGTCATGGTTCTCAAGATTTTTTAATTAAGCCCTGCGAAGCCGACCGATTACGTGTCAC
GGTGAATAATGCGATCCGCAAAGCAACGAAATTAAAGAATGAAGCTGACAACCCTGGCAATCAAAATTATCAAGGCTTTA
TTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCTGCTGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCGGAGGCGATTCACGCAGCAAGTAAGCGTGGAGATAAGCCGTTTATCGC
CATCAACTGTGCAGCAATTCCGAAAGACCTTATTGAAAGTGAACTGTTTGGTCACGTAAAAGGTGCTTTCACCGGTGCGG
CTAATGATCGACAAGGTGCGGCAGAACTGGCTGATGGCGGCACGCTGTTCCTTGATGAGCTGTGTGAAATGGACTTGGAT
CTTCAAACTAAGTTATTGCGTTTTATTCAAACGGGTACGTTCCAAAAGGTCGGTTCTTCTAAAATGAAGAGCGTAGACGT
GCGCTTTGTGTGTGCGACCAACCGCGACCCATGGAAAGAGGTTCAAGAAGGCCGTTTCCGTGAAGACCTTTACTATCGTT
TGTACGTAATTCCATTACACCTCCCACCACTACGTGAACGTGGTGAAGATGTAATTGAAATTGCTTATTCATTGCTTGGC
TACATGTCGCATGAAGAAGGGAAGAGCTTTGTACGTTTCTCTCCAGAGGTAATAGAGCGATTCAATGATTACGAATGGCC
TGGAAACGTTCGCCAATTGCAAAACGTGTTGCGTAACATTGTTGTCTTGAACAGCGGCAAAGAGATTTCTTTAGACATGT
TACCGCCGCCGTTGAACGCGCCAATGACTAAGACACCAATGCCAAGAGCCGTTGAAATCGAGAGTTTTTCCGCTTCTGAT
ATTATACCGTTGTGGATGACAGAGAAGTCCGCCATTGAACAGGCGATAGAGGCTTGCGATGGCAATATACCGAGAGCTGC
TGGGTATTTGGATGTAAGCCCTTCAACGATTTATCGTAAGCTCCAAACTTGGAATCAAACCGAAGAGCAGAAAAAGGCAT
GA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.723

98.896

0.868
  pilR Pseudomonas aeruginosa PAK

37.303

98.234

0.366

Multiple sequence alignment