Detailed information NTG0207996

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CO706_RS11570
• Genome accession: NZ_CP023535
• Coordinates: 1925608..1926600 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_403
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1920608..1931600

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CO706_RS11545 (CO706_11545)	ygbN	1921262..1922626 (+)	1365	WP_000104428.1	GntP family transporter	-
CO706_RS11550 (CO706_11550)	-	1922666..1922902 (-)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CO706_RS11555 (CO706_11555)	-	1922913..1924340 (-)	1428	WP_000863197.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CO706_RS11560 (CO706_11560)	-	1924340..1924933 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CO706_RS11565 (CO706_11565)	-	1925080..1925487 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
CO706_RS11570 (CO706_11570)	rpoS	1925608..1926600 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CO706_RS11575 (CO706_11575)	nlpD	1926663..1927757 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CO706_RS11580 (CO706_11580)	pcm	1927942..1928568 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CO706_RS11585 (CO706_11585)	surE	1928562..1929323 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CO706_RS11590 (CO706_11590)	truD	1929304..1930353 (-)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
CO706_RS11595 (CO706_11595)	ispF	1930350..1930829 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CO706_RS11600 (CO706_11600)	ispD	1930829..1931539 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=207996 CO706_RS11570 WP_000081550.1 1925608..1926600(-) (rpoS) [Escherichia coli strain FDAARGOS_403]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=207996 CO706_RS11570 WP_000081550.1 1925608..1926600(-) (rpoS) [Escherichia coli strain FDAARGOS_403]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715