Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BSZ04_RS09500 Genome accession   NZ_CP018312
Coordinates   105346..105978 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio rotiferianus strain B64D1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 100346..110978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS09485 (BSZ04_09390) astA 101602..102621 (+) 1020 WP_010443978.1 arginine N-succinyltransferase -
  BSZ04_RS09490 (BSZ04_09395) astD 102650..104107 (+) 1458 WP_010443977.1 succinylglutamate-semialdehyde dehydrogenase -
  BSZ04_RS09495 (BSZ04_09400) - 104372..105163 (+) 792 WP_088880286.1 DUF1338 domain-containing protein -
  BSZ04_RS09500 (BSZ04_09405) crp 105346..105978 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  BSZ04_RS09505 (BSZ04_09410) - 106218..107087 (-) 870 WP_088880287.1 phosphoribulokinase -
  BSZ04_RS09510 (BSZ04_09415) - 107215..107424 (-) 210 WP_010443970.1 YheU family protein -
  BSZ04_RS09515 (BSZ04_09420) - 107487..108494 (-) 1008 WP_010443968.1 hydrolase -
  BSZ04_RS09520 (BSZ04_09425) - 108709..109188 (-) 480 WP_010443967.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=207975 BSZ04_RS09500 WP_005381432.1 105346..105978(-) (crp) [Vibrio rotiferianus strain B64D1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=207975 BSZ04_RS09500 WP_005381432.1 105346..105978(-) (crp) [Vibrio rotiferianus strain B64D1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment