Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BSZ05_RS04865 | Genome accession | NZ_CP018308 |
| Coordinates | 1057876..1058472 (-) | Length | 198 a.a. |
| NCBI ID | WP_088876316.1 | Uniprot ID | A0AAN1FEJ6 |
| Organism | Vibrio mediterranei strain QT6D1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1052876..1063472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ05_RS04845 (BSZ05_04835) | aroB | 1053838..1054923 (-) | 1086 | WP_088876314.1 | 3-dehydroquinate synthase | - |
| BSZ05_RS04850 (BSZ05_04840) | aroK | 1054952..1055476 (-) | 525 | WP_038231065.1 | shikimate kinase AroK | - |
| BSZ05_RS04855 (BSZ05_04845) | pilQ | 1055671..1057353 (-) | 1683 | WP_420882973.1 | type IV pilus secretin PilQ | Machinery gene |
| BSZ05_RS04860 (BSZ05_04850) | - | 1057380..1057892 (-) | 513 | WP_161493940.1 | pilus assembly protein PilP | - |
| BSZ05_RS04865 (BSZ05_04855) | pilO | 1057876..1058472 (-) | 597 | WP_088876316.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BSZ05_RS04870 (BSZ05_04860) | - | 1058479..1059072 (-) | 594 | WP_088876317.1 | PilN domain-containing protein | - |
| BSZ05_RS04875 (BSZ05_04865) | pilM | 1059073..1060056 (-) | 984 | WP_088876318.1 | pilus assembly protein PilM | - |
| BSZ05_RS04880 (BSZ05_04870) | - | 1060203..1062851 (+) | 2649 | WP_088876319.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 23046.16 Da Isoelectric Point: 5.6041
>NTDB_id=207944 BSZ05_RS04865 WP_088876316.1 1057876..1058472(-) (pilO) [Vibrio mediterranei strain QT6D1]
MLDFELDDIKDWPFNYQLVVGLLVFMSSSYAWFWFSTKSYSDELERAVQLEQRLKLELKTVVAQTANLPNKKQQLELVRS
RYQRLLHLLPVQQELATLLAGVNQEGLHNQLTFTRIDWGKRASEHFLYKLPINIELTGNYNDIGHFSQAIAELSRMVLIE
DAEWQRVSQESSVLHFRVQAATYQLHEDFGEKGDAGKN
MLDFELDDIKDWPFNYQLVVGLLVFMSSSYAWFWFSTKSYSDELERAVQLEQRLKLELKTVVAQTANLPNKKQQLELVRS
RYQRLLHLLPVQQELATLLAGVNQEGLHNQLTFTRIDWGKRASEHFLYKLPINIELTGNYNDIGHFSQAIAELSRMVLIE
DAEWQRVSQESSVLHFRVQAATYQLHEDFGEKGDAGKN
Nucleotide
Download Length: 597 bp
>NTDB_id=207944 BSZ05_RS04865 WP_088876316.1 1057876..1058472(-) (pilO) [Vibrio mediterranei strain QT6D1]
GTGTTGGACTTTGAACTGGATGACATAAAAGATTGGCCATTTAACTACCAGCTTGTTGTCGGCCTATTGGTTTTCATGTC
ATCGAGTTATGCATGGTTTTGGTTTTCAACAAAGTCTTATTCTGATGAGTTAGAACGAGCTGTGCAGTTGGAACAACGGT
TAAAACTAGAGCTAAAAACAGTAGTTGCGCAAACGGCGAACCTGCCTAATAAAAAGCAACAACTTGAGCTGGTGAGAAGT
CGCTATCAACGGTTACTTCATTTATTACCAGTTCAACAAGAACTCGCGACACTACTTGCCGGTGTCAACCAAGAAGGGCT
GCACAACCAACTCACTTTCACTCGAATTGACTGGGGCAAGCGCGCTTCGGAGCACTTTCTCTACAAGCTGCCAATAAATA
TAGAACTCACCGGAAATTACAACGACATTGGTCACTTTAGTCAGGCCATTGCCGAGTTGTCTCGAATGGTGCTTATCGAA
GATGCTGAGTGGCAGCGAGTGAGTCAGGAAAGCAGTGTATTACATTTCCGAGTTCAAGCTGCAACCTATCAACTGCATGA
GGATTTTGGGGAGAAAGGCGATGCTGGTAAGAATTAG
GTGTTGGACTTTGAACTGGATGACATAAAAGATTGGCCATTTAACTACCAGCTTGTTGTCGGCCTATTGGTTTTCATGTC
ATCGAGTTATGCATGGTTTTGGTTTTCAACAAAGTCTTATTCTGATGAGTTAGAACGAGCTGTGCAGTTGGAACAACGGT
TAAAACTAGAGCTAAAAACAGTAGTTGCGCAAACGGCGAACCTGCCTAATAAAAAGCAACAACTTGAGCTGGTGAGAAGT
CGCTATCAACGGTTACTTCATTTATTACCAGTTCAACAAGAACTCGCGACACTACTTGCCGGTGTCAACCAAGAAGGGCT
GCACAACCAACTCACTTTCACTCGAATTGACTGGGGCAAGCGCGCTTCGGAGCACTTTCTCTACAAGCTGCCAATAAATA
TAGAACTCACCGGAAATTACAACGACATTGGTCACTTTAGTCAGGCCATTGCCGAGTTGTCTCGAATGGTGCTTATCGAA
GATGCTGAGTGGCAGCGAGTGAGTCAGGAAAGCAGTGTATTACATTTCCGAGTTCAAGCTGCAACCTATCAACTGCATGA
GGATTTTGGGGAGAAAGGCGATGCTGGTAAGAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
51.053 |
95.96 |
0.49 |
| pilO | Vibrio campbellii strain DS40M4 |
51.648 |
91.919 |
0.475 |