Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BSZ05_RS04855 Genome accession   NZ_CP018308
Coordinates   1055671..1057353 (-) Length   560 a.a.
NCBI ID   WP_420882973.1    Uniprot ID   -
Organism   Vibrio mediterranei strain QT6D1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050671..1062353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS04835 (BSZ05_04825) - 1051345..1052169 (-) 825 WP_006074827.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  BSZ05_RS04840 (BSZ05_04830) - 1052293..1053744 (-) 1452 WP_088876313.1 SPOR domain-containing protein -
  BSZ05_RS04845 (BSZ05_04835) aroB 1053838..1054923 (-) 1086 WP_088876314.1 3-dehydroquinate synthase -
  BSZ05_RS04850 (BSZ05_04840) aroK 1054952..1055476 (-) 525 WP_038231065.1 shikimate kinase AroK -
  BSZ05_RS04855 (BSZ05_04845) pilQ 1055671..1057353 (-) 1683 WP_420882973.1 type IV pilus secretin PilQ Machinery gene
  BSZ05_RS04860 (BSZ05_04850) - 1057380..1057892 (-) 513 WP_161493940.1 pilus assembly protein PilP -
  BSZ05_RS04865 (BSZ05_04855) pilO 1057876..1058472 (-) 597 WP_088876316.1 type 4a pilus biogenesis protein PilO Machinery gene
  BSZ05_RS04870 (BSZ05_04860) - 1058479..1059072 (-) 594 WP_088876317.1 PilN domain-containing protein -
  BSZ05_RS04875 (BSZ05_04865) pilM 1059073..1060056 (-) 984 WP_088876318.1 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 61067.00 Da        Isoelectric Point: 4.5821

>NTDB_id=207943 BSZ05_RS04855 WP_420882973.1 1055671..1057353(-) (pilQ) [Vibrio mediterranei strain QT6D1]
MLSIWRWAFYLWALFISTDLIAIPQTNQLVDVSFELDKQKRAVVVIELSHAGSIVDISAESQGIKIVVKQTKIASDKLAI
LDVTDFSTAVNQIELFDDSPDVRIFVETVTAVQYQYTMHGKQLKVTILPLLQQQSDEQKLFGSHSGKLTSINFQDIPVRS
VLQLLADYNHFNLVASDSVQGNLTLRLDGVPWTEVLDIILRVKGLDKRVKGNIILVAPKAELDLQEKQALEKGRLAEQIG
QLKSEIININYAKAADVAAMIGGDSDVSMLSERGSVAIDERTNALLVRELPDNLRVIKEIIASLDIPVKQVQIEARVVTI
KEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGIGGGEVDIDDFLNVNLGALSDNAASIAFQVASLGSNTLLDLELSA
LQSESKAEIISSPRLITTNKKSAYIEQGTEIPYLKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVL
KTLEGETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPLLGDIPGLGALFRRTYENIGKNELLIFVTPKIITQ

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=207943 BSZ05_RS04855 WP_420882973.1 1055671..1057353(-) (pilQ) [Vibrio mediterranei strain QT6D1]
ATGTTGTCCATTTGGAGGTGGGCATTCTATTTGTGGGCGTTGTTCATCAGTACTGATTTGATCGCCATTCCCCAAACTAA
TCAACTTGTTGATGTCTCATTTGAACTGGATAAACAGAAGCGTGCAGTAGTCGTTATTGAGCTTTCTCATGCTGGCAGTA
TTGTGGATATTAGCGCCGAGTCGCAAGGAATAAAGATTGTGGTAAAGCAAACCAAAATCGCGTCAGACAAGCTAGCGATT
TTGGATGTTACGGATTTTTCTACCGCAGTGAATCAGATAGAACTATTTGATGACAGTCCCGATGTTCGGATCTTTGTCGA
GACGGTCACGGCAGTTCAATATCAATATACGATGCATGGTAAACAACTGAAAGTGACAATTTTACCTCTGCTTCAGCAAC
AAAGTGATGAACAAAAACTGTTTGGTAGTCATAGTGGCAAGCTCACTTCAATCAATTTCCAAGACATTCCTGTGCGCAGT
GTATTGCAGCTTCTGGCTGACTATAACCACTTTAATTTAGTGGCATCCGATAGTGTCCAAGGCAACTTAACCCTGCGTTT
AGATGGCGTGCCATGGACGGAAGTCCTCGACATTATCCTGCGAGTAAAAGGGTTAGATAAACGGGTAAAGGGCAACATCA
TCTTAGTGGCACCTAAAGCAGAGCTGGATTTACAAGAGAAGCAAGCGTTAGAAAAGGGGCGCTTGGCCGAGCAAATTGGT
CAACTTAAATCGGAAATCATTAACATTAACTATGCTAAAGCGGCGGATGTAGCGGCCATGATTGGTGGAGATAGTGATGT
CAGTATGTTATCTGAACGAGGTTCAGTCGCTATCGATGAGCGCACCAACGCTTTATTGGTGCGAGAACTGCCGGATAATC
TTCGGGTAATTAAAGAGATCATTGCCTCACTAGATATACCCGTAAAACAGGTACAAATTGAAGCGCGAGTGGTCACTATC
AAAGAGGGTAATATTGAAGAGTTGGGGATACGATGGGGTTATACATCGATAAATGGTGACACCACGATCGGCAGTACGAT
AGAAGGTAACCTTGCTTCCTCAGGCATCGGTGGGGGAGAGGTGGACATTGATGACTTCCTTAATGTTAACTTGGGTGCGC
TGTCTGACAATGCCGCCAGTATCGCATTTCAAGTAGCAAGCCTCGGGTCAAATACATTACTTGATCTAGAGTTGTCTGCA
TTACAAAGTGAATCGAAAGCCGAAATCATATCTAGTCCACGTCTTATCACAACCAATAAAAAGTCTGCTTATATAGAGCA
GGGAACAGAGATTCCTTATTTGAAATCGACATCGAGCGGAGCGACAGCGGTTGAGTTTAAAAAAGCGGTGCTTTCTTTGA
CGGTGACTCCGCAGATCACACCCGACAATCGCCTTATTCTCGACTTAGATGTGACTCAAGACAGGGTTGGAGAAGTGTTG
AAAACTTTAGAGGGTGAAACAGTGGCGATTGATACTCAAAGGATAGGAACTCAAGTTCTGGTTAACGATGGTGAAACTGT
GGTGTTAGGCGGTATTTTTCAACATGCCATGACCAGCAAGGTAGATAAAGTGCCACTTCTTGGTGATATTCCGGGGTTGG
GGGCATTATTTAGACGAACCTATGAAAACATCGGTAAGAATGAGTTACTGATCTTCGTAACTCCTAAGATTATTACTCAG
TAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(400-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

65.872

97.321

0.641
  pilQ Vibrio cholerae strain A1552

66.916

95.536

0.639
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

66.916

95.536

0.639
  pilQ Legionella pneumophila strain Lp02

41.682

97.679

0.407
  pilQ Legionella pneumophila strain ERS1305867

41.682

97.679

0.407
  comQ Acinetobacter baylyi ADP1

39.469

100

0.398
  pilQ Acinetobacter baumannii strain A118

37.262

100

0.384
  pilQ Acinetobacter baumannii D1279779

37.262

100

0.384
  pilQ Pseudomonas aeruginosa PAK

37.234

100

0.375

Multiple sequence alignment