Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BSZ05_RS04785 Genome accession   NZ_CP018308
Coordinates   1039350..1039982 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio mediterranei strain QT6D1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034350..1044982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS04760 (BSZ05_04750) - 1034773..1035369 (-) 597 WP_006074812.1 LysE family translocator -
  BSZ05_RS04765 (BSZ05_04755) - 1035489..1036877 (+) 1389 WP_088876307.1 PLP-dependent aminotransferase family protein -
  BSZ05_RS04770 (BSZ05_04760) - 1036874..1037860 (+) 987 WP_088876308.1 hydrolase -
  BSZ05_RS04775 (BSZ05_04765) - 1037899..1038111 (+) 213 WP_031493588.1 YheU family protein -
  BSZ05_RS04780 (BSZ05_04770) - 1038237..1039106 (+) 870 WP_006074816.1 phosphoribulokinase -
  BSZ05_RS04785 (BSZ05_04775) crp 1039350..1039982 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  BSZ05_RS04790 (BSZ05_04780) - 1040051..1040842 (-) 792 WP_088876309.1 DUF1338 domain-containing protein -
  BSZ05_RS04795 (BSZ05_04785) astD 1040855..1042312 (-) 1458 WP_088876310.1 succinylglutamate-semialdehyde dehydrogenase -
  BSZ05_RS04800 (BSZ05_04790) astA 1042408..1043427 (-) 1020 WP_062463028.1 arginine N-succinyltransferase -
  BSZ05_RS04805 (BSZ05_04795) - 1043501..1044718 (-) 1218 WP_006074821.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=207942 BSZ05_RS04785 WP_004410522.1 1039350..1039982(+) (crp) [Vibrio mediterranei strain QT6D1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=207942 BSZ05_RS04785 WP_004410522.1 1039350..1039982(+) (crp) [Vibrio mediterranei strain QT6D1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACGTTAGAGTGGTTCCTTTCACACTGCCACATTCACAAGTATCCTTCTAA
AAGCACGCTAATCCATGCGGGCGAGAAAGCGGAAACTCTTTACTACATCGTAAAAGGTTCTGTAGCGGTACTGATCAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATTGGTGAACTTGGCTTGTTCGAAGAAGAC
CAAGAACGTACGGCATGGGTACGTGCAAAATCTCCTTGTGAAGTTGCGGAAATCTCATTCAAGAAATTCCGTCAGCTGAT
TCAAGTTAACCCTGATATTCTAATGCGCTTATCTGCTCAAATGGCAAGTCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACTTAGCGTTCCTAGACGTAACAGGCCGCATTGCTCAAACGCTACTAAACCTAGCGAAGCAACCAGACGCAATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGCCAAATCGTTGGCTGTTCACGTGAGACAGTGGGACGCAT
TCTTAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAGACTATTGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment