Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BSR55_RS19655 Genome accession   NZ_CP018259
Coordinates   4154124..4155539 (+) Length   471 a.a.
NCBI ID   WP_100886096.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4149124..4160539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS19635 (BSR55_19635) thrC 4149219..4150358 (+) 1140 WP_046759909.1 threonine synthase -
  BSR55_RS19640 (BSR55_19640) pbpG 4150581..4151633 (-) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BSR55_RS19645 (BSR55_19645) - 4151866..4152501 (+) 636 WP_004718392.1 response regulator -
  BSR55_RS19650 (BSR55_19650) pilS 4152538..4154106 (+) 1569 WP_100886095.1 sensor histidine kinase Regulator
  BSR55_RS19655 (BSR55_19655) pilR 4154124..4155539 (+) 1416 WP_100886096.1 sigma-54-dependent transcriptional regulator Regulator
  BSR55_RS19660 (BSR55_19660) - 4155638..4156810 (-) 1173 WP_100886097.1 S41 family peptidase -
  BSR55_RS19665 (BSR55_19665) gpmI 4156839..4158386 (-) 1548 WP_100886098.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BSR55_RS19670 (BSR55_19670) lptG 4158553..4159623 (-) 1071 WP_004826310.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53093.11 Da        Isoelectric Point: 6.7083

>NTDB_id=207806 BSR55_RS19655 WP_100886096.1 4154124..4155539(+) (pilR) [Acinetobacter bereziniae strain XH901]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLSETVTKAPLEESMLIGDSQIIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFIAINCGAISEELMESELFGHKKGCFSGATQDKQGLVQAANGGTLFLDE
VAELSLAMQAKLLRAVQEKKIRPLGSDTEIEVDFRIISATHQNIEALVEQGKFRHDLFFRIHVMDITLPPLRDRERDILI
LANHFIQQICTEWRIPSKSFTDAAKTFLLQQHYSGNVRELRNIIEKAITMCDEDSIDIQQLQPAPQRSSINKIESFESVP
TNHTAIELPNKAPNIPKEGLEQYLENVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=207806 BSR55_RS19655 WP_100886096.1 4154124..4155539(+) (pilR) [Acinetobacter bereziniae strain XH901]
ATGACTACACGACAACCATTGGTGTTACTTGTAGATGATGAACAAGATTTATGTATGTTGATGCAAATGAGCCTATCGCG
AATGGGCATCAAAACACATATGGCACATCATTTACAGCAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACAGATTTAAACTTGCCTGATGGGAGTGGTTTAGATTTAGTCAAACATGTATCGCAACATTATCCAAAAACGCCTATC
GCTGTACTCACAGCATATGGCAATATGGAAATCGCAATTGCATCACTTAAAGCTGGGGCTTTTGATTTCGTTAGCAAACC
AATCAATCAACTACATTTACAGCAACTTTTACAAAAAGCTTTACATGTTCCTCAGTTGAGTGAAACTGTAACTAAAGCCC
CACTTGAAGAGTCCATGCTCATTGGTGACTCACAAATCATTCGTAAATTAAGAGAATCGATTAAAAAAATTGCCCGTTCA
CAAGCACCTGTTTTTATTACTGGGGAGTCTGGTACAGGGAAAGAAGTGGTTGCGAATCTTATTCATTTACTCAGTAACCG
CAGTGATAGTCCATTTATTGCAATCAACTGCGGGGCTATCTCTGAAGAACTGATGGAAAGTGAGCTTTTCGGACATAAGA
AAGGCTGTTTCTCTGGCGCAACGCAAGATAAACAAGGCTTGGTTCAGGCTGCCAATGGTGGCACATTATTCTTGGATGAA
GTCGCAGAACTGTCTTTAGCCATGCAGGCTAAACTTTTACGTGCTGTTCAGGAAAAAAAAATCCGTCCTTTGGGTAGCGA
TACTGAAATAGAAGTTGATTTTCGAATCATCAGTGCAACGCATCAAAATATCGAAGCTCTGGTTGAACAAGGGAAGTTCC
GCCATGACTTGTTTTTTAGAATTCATGTCATGGATATTACACTCCCGCCATTACGTGATCGCGAACGTGACATCTTGATT
TTAGCCAATCATTTTATTCAACAAATTTGTACTGAATGGCGAATTCCGAGCAAATCATTCACAGATGCAGCTAAAACATT
TCTTTTACAGCAACATTATTCCGGTAATGTTCGTGAACTGCGCAATATTATTGAAAAAGCCATCACGATGTGTGATGAGG
ATTCTATCGATATTCAACAACTCCAACCTGCGCCACAACGGAGCAGTATTAACAAAATTGAATCCTTTGAGTCTGTCCCG
ACCAATCATACGGCGATTGAACTTCCAAACAAAGCACCGAATATTCCGAAAGAAGGCTTGGAACAATATTTGGAAAATGT
TGAAAAGGAAGTCTTGTTATCTGCGTTAAATCAAACGCATTGGAATCGGACCTTAGCTGCGAAAAAACTCGGCATGACCT
TTCGATCTTTACGTTATCGTTTGAAAAAGTTTGGTCTAGATACTGATGATGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

70.127

100

0.703
  pilR Pseudomonas aeruginosa PAK

47.186

98.089

0.463

Multiple sequence alignment