Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BS064_RS17925 Genome accession   NZ_CP018254
Coordinates   3642194..3642604 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain AF-401     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637194..3647604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS064_RS17895 (BS064_17965) - 3637280..3637549 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  BS064_RS17900 (BS064_17970) rapZ 3637546..3638397 (-) 852 WP_000821671.1 RNase adapter RapZ -
  BS064_RS17905 (BS064_17975) panC 3638420..3639268 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  BS064_RS17910 (BS064_17980) panB 3639272..3640081 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  BS064_RS17915 (BS064_17985) folK 3640127..3640609 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BS064_RS17920 (BS064_17990) pcnB 3640606..3642069 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  BS064_RS17925 (BS064_17995) comEA 3642194..3642604 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  BS064_RS17930 (BS064_18000) mazG 3642573..3643379 (-) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  BS064_RS17935 (BS064_18005) - 3643491..3644264 (+) 774 WP_000682843.1 SDR family oxidoreductase -
  BS064_RS17940 (BS064_18010) - 3644309..3646615 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=207695 BS064_RS17925 WP_002041921.1 3642194..3642604(-) (comEA) [Acinetobacter baumannii strain AF-401]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=207695 BS064_RS17925 WP_002041921.1 3642194..3642604(-) (comEA) [Acinetobacter baumannii strain AF-401]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment