Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CO204_RS10255 Genome accession   NZ_CP023477
Coordinates   2015826..2016419 (-) Length   197 a.a.
NCBI ID   WP_002262395.1    Uniprot ID   Q8CWW3
Organism   Streptococcus mutans strain LAR01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010826..2021419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS10225 (CO204_10170) - 2011087..2011299 (-) 213 Protein_1928 hypothetical protein -
  CO204_RS10230 (CO204_10175) - 2011428..2011853 (-) 426 WP_002271571.1 hypothetical protein -
  CO204_RS10235 (CO204_10180) spx 2012105..2012503 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  CO204_RS10240 (CO204_10185) recA 2012588..2013739 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  CO204_RS10245 (CO204_10190) cinA 2013779..2015035 (-) 1257 WP_106006865.1 competence/damage-inducible protein A Machinery gene
  CO204_RS10250 (CO204_10195) - 2015184..2015744 (-) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  CO204_RS10255 (CO204_10200) ruvA 2015826..2016419 (-) 594 WP_002262395.1 Holliday junction branch migration protein RuvA Machinery gene
  CO204_RS10260 (CO204_10205) hexB 2016602..2018557 (-) 1956 WP_002268465.1 DNA mismatch repair endonuclease MutL Machinery gene
  CO204_RS10265 (CO204_10210) - 2018782..2019060 (+) 279 Protein_1936 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21896.11 Da        Isoelectric Point: 5.6313

>NTDB_id=207487 CO204_RS10255 WP_002262395.1 2015826..2016419(-) (ruvA) [Streptococcus mutans strain LAR01]
MYDYIKGNLTKITAKYIVLETGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=207487 CO204_RS10255 WP_002262395.1 2015826..2016419(-) (ruvA) [Streptococcus mutans strain LAR01]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAACTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACCGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

72.081

100

0.721
  ruvA Streptococcus pneumoniae D39

72.081

100

0.721
  ruvA Streptococcus pneumoniae TIGR4

72.081

100

0.721
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411