Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CO204_RS01855 Genome accession   NZ_CP023477
Coordinates   354470..355168 (+) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans strain LAR01     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 349470..360168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS01820 (CO204_01820) gatC 349660..349962 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  CO204_RS01825 (CO204_01825) gatA 349962..351428 (+) 1467 WP_019313408.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  CO204_RS01830 (CO204_01830) gatB 351428..352867 (+) 1440 WP_106006681.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CO204_RS10955 - 353114..353293 (+) 180 Protein_325 transposase -
  CO204_RS10820 - 353412..354365 (+) 954 Protein_326 reverse transcriptase domain-containing protein -
  CO204_RS01855 (CO204_01855) scnR 354470..355168 (+) 699 WP_002263491.1 response regulator Regulator
  CO204_RS01860 (CO204_01860) - 355269..356617 (+) 1349 WP_086956939.1 IS3-like element ISSmu1 family transposase -
  CO204_RS01865 (CO204_01865) - 356670..358004 (+) 1335 WP_106006682.1 HAMP domain-containing sensor histidine kinase -
  CO204_RS01870 (CO204_01870) - 358583..359839 (-) 1257 Protein_330 ISL3-like element ISSmu2 family transposase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=207408 CO204_RS01855 WP_002263491.1 354470..355168(+) (scnR) [Streptococcus mutans strain LAR01]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=207408 CO204_RS01855 WP_002263491.1 354470..355168(+) (scnR) [Streptococcus mutans strain LAR01]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCCATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCCACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362

Multiple sequence alignment