Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC72_RS14575 Genome accession   NZ_CP023472
Coordinates   2795202..2795930 (+) Length   242 a.a.
NCBI ID   WP_120459084.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2790202..2800930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS14560 (FORC72_2520) clpC 2790637..2793210 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  FORC72_RS14565 (FORC72_2521) pgeF 2793358..2794086 (-) 729 WP_025534066.1 peptidoglycan editing factor PgeF -
  FORC72_RS14570 (FORC72_2522) rluD 2794088..2795065 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC72_RS14575 (FORC72_2523) comL 2795202..2795930 (+) 729 WP_120459084.1 outer membrane protein assembly factor BamD Machinery gene
  FORC72_RS14580 (FORC72_2524) - 2796065..2797546 (+) 1482 WP_029803136.1 lytic transglycosylase F -
  FORC72_RS14585 (FORC72_2525) raiA 2797877..2798203 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  FORC72_RS14590 (FORC72_2526) pheA 2798447..2799625 (+) 1179 WP_005468591.1 prephenate dehydratase -
  FORC72_RS14595 (FORC72_2527) yjjX 2799650..2800183 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  FORC72_RS14600 (FORC72_2528) trpR 2800232..2800543 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27860.84 Da        Isoelectric Point: 5.8151

>NTDB_id=207362 FORC72_RS14575 WP_120459084.1 2795202..2795930(+) (comL) [Vibrio parahaemolyticus strain FORC_072]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLAIADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=207362 FORC72_RS14575 WP_120459084.1 2795202..2795930(+) (comL) [Vibrio parahaemolyticus strain FORC_072]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTTTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCTGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTATCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405