Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JN853_RS09675 Genome accession   NZ_CP018202
Coordinates   1949501..1951717 (+) Length   738 a.a.
NCBI ID   WP_003381120.1    Uniprot ID   A0A2V0QHQ3
Organism   Pseudomonas syringae pv. actinidiae ICMP 9853     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944501..1956717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN853_RS09665 (JN853_09570) - 1946388..1947239 (-) 852 WP_003381122.1 DUF4123 domain-containing protein -
  JN853_RS09670 (JN853_09575) tssI 1947236..1949263 (-) 2028 WP_003381121.1 type VI secretion system tip protein VgrG -
  JN853_RS09675 (JN853_09580) comA 1949501..1951717 (+) 2217 WP_003381120.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JN853_RS09680 (JN853_09585) exbB 1951800..1952477 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JN853_RS09685 (JN853_09590) - 1952474..1952905 (+) 432 WP_003381117.1 ExbD/TolR family protein -
  JN853_RS09690 (JN853_09595) lpxK 1952905..1953900 (+) 996 WP_003381114.1 tetraacyldisaccharide 4'-kinase -
  JN853_RS09695 (JN853_09600) - 1953918..1954103 (+) 186 WP_003381112.1 Trm112 family protein -
  JN853_RS09700 (JN853_09605) kdsB 1954100..1954864 (+) 765 WP_003381111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JN853_RS09705 (JN853_09610) murB 1954899..1955918 (+) 1020 WP_003381110.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80643.94 Da        Isoelectric Point: 10.5947

>NTDB_id=207210 JN853_RS09675 WP_003381120.1 1949501..1951717(+) (comA) [Pseudomonas syringae pv. actinidiae ICMP 9853]
MRTGMIALALGLVVLRFLPALPPTWLVLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVVGLPSVAEGVVRFELAHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPFPVVGEGLLWLAGGALEWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPDGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRARWLQAPHHGSRSSSSKVFLQAVAPVGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=207210 JN853_RS09675 WP_003381120.1 1949501..1951717(+) (comA) [Pseudomonas syringae pv. actinidiae ICMP 9853]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGTCCTACGCTTTCTGCCCGCTTTACCGCCGACCTGGCTCGT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTTCTGCTCGGCTTCACGT
GGGCGTGTGTTTCGGCGCAGTGGGCATTGAATGACCGTCTGCAGCAACGGCTGGACGGCCAGACGCTGTGGTTGCAAGGC
AAAGTGGTCGGTTTGCCTAGCGTTGCCGAGGGCGTGGTTCGTTTCGAGTTGGCGCACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCGCTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGGTTAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGTTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTAC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTTGCTGGCGTGATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGCGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCATTCATCGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCTATCGGCCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCGTTG
ATCGGGACGTTATTGCTGCCGTTTCCTGTTGTCGGTGAAGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGGAATGGCTATT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTACCCGCCTGGCTGCCCAGCGCGGTGCCCGGCTGGGCGTGGCTGTTGAGTC
TGCTCGGTGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGTTGGCCATTATTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCCGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGATGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACGCTGCTCTACGACGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAAAGGGTGGTCGTGC
CCGCGATGCGCAAGTCCGGTGTTCGCCATCTGGACCTGATGCTGATCAGCCATGCCGACGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGAGTGTTGGGCGGGGAGCTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCGACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCTGGCGGCGAGCGTCTGCTGCTGACGGGCGACATCGATGTGCACGCCGAA
CGCGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCGCTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGGTGGGCGTGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CTTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V0QHQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

97.019

0.617
  comA Ralstonia pseudosolanacearum GMI1000

32.5

100

0.37

Multiple sequence alignment