Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JN853_RS09680 Genome accession   NZ_CP018202
Coordinates   1951800..1952477 (+) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. actinidiae ICMP 9853     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1946800..1957477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN853_RS09670 (JN853_09575) tssI 1947236..1949263 (-) 2028 WP_003381121.1 type VI secretion system tip protein VgrG -
  JN853_RS09675 (JN853_09580) comA 1949501..1951717 (+) 2217 WP_003381120.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JN853_RS09680 (JN853_09585) exbB 1951800..1952477 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JN853_RS09685 (JN853_09590) - 1952474..1952905 (+) 432 WP_003381117.1 ExbD/TolR family protein -
  JN853_RS09690 (JN853_09595) lpxK 1952905..1953900 (+) 996 WP_003381114.1 tetraacyldisaccharide 4'-kinase -
  JN853_RS09695 (JN853_09600) - 1953918..1954103 (+) 186 WP_003381112.1 Trm112 family protein -
  JN853_RS09700 (JN853_09605) kdsB 1954100..1954864 (+) 765 WP_003381111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JN853_RS09705 (JN853_09610) murB 1954899..1955918 (+) 1020 WP_003381110.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=207211 JN853_RS09680 WP_003381119.1 1951800..1952477(+) (exbB) [Pseudomonas syringae pv. actinidiae ICMP 9853]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=207211 JN853_RS09680 WP_003381119.1 1951800..1952477(+) (exbB) [Pseudomonas syringae pv. actinidiae ICMP 9853]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGACTCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCT
GAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCG
TCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAGGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment