Detailed information NTG0207192

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BOQ57_RS20310
• Genome accession: NZ_CP018201
• Coordinates: 4334854..4335726 (+)
• Length: 290 a.a.
• NCBI ID: WP_065475375.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain MX16A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4329854..4340726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BOQ57_RS20285 (BOQ57_20180)	nadC	4330141..4330998 (+)	858	WP_073351948.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BOQ57_RS20295 (BOQ57_20190)	tapA	4331321..4331764 (+)	444	WP_073352603.1	type IVa pilus major pilin TapA	-
BOQ57_RS20300 (BOQ57_20195)	pilB	4331768..4333474 (+)	1707	WP_073351950.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
BOQ57_RS20305 (BOQ57_20200)	pilC	4333590..4334831 (+)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
BOQ57_RS20310 (BOQ57_20205)	pilD	4334854..4335726 (+)	873	WP_065475375.1	A24 family peptidase	Machinery gene
BOQ57_RS20315 (BOQ57_20210)	coaE	4335745..4336359 (+)	615	WP_073351951.1	dephospho-CoA kinase	-
BOQ57_RS20320 (BOQ57_20215)	zapD	4336397..4337119 (+)	723	WP_043160635.1	cell division protein ZapD	-
BOQ57_RS20325 (BOQ57_20220)	yacG	4337129..4337323 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
BOQ57_RS20330 (BOQ57_20225)	mutT	4337384..4337797 (-)	414	WP_174892455.1	8-oxo-dGTP diphosphatase MutT	-
BOQ57_RS20335 (BOQ57_20230)	-	4337806..4338990 (-)	1185	WP_073351955.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32484.77 Da
• Isoelectric Point: 6.7410

>NTDB_id=207192 BOQ57_RS20310 WP_065475375.1 4334854..4335726(+) (pilD) [Aeromonas hydrophila strain MX16A]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=207192 BOQ57_RS20310 WP_065475375.1 4334854..4335726(+) (pilD) [Aeromonas hydrophila strain MX16A]
ATGTTGCTAATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGTTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGTGCTTTCATCGGAATTGGCCTCATTCTGCTGCGCAACCATCATCAGAATAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459